Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_5582 |
Symbol | |
ID | 5319884 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009621 |
Strand | - |
Start bp | 548777 |
End bp | 550051 |
Gene Length | 1275 bp |
Protein Length | 424 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640777329 |
Product | extracellular solute-binding protein |
Protein accession | YP_001314261 |
Protein GI | 150377666 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.152115 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.231128 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGAATT GGTTTAAACT TACGAAGGCA GTGCTTTTGG CGGGAGGTCT CATGACCTCC GTCGCCCACG CCGAGGAGAC CGTCACATGG TGGGACTTCT TCGGCGGCGG TGACGGCGTT CGCATGAAAC AATTGGTCGC CGATTTCAAC GAGGCCCACA AGGGCAAGAT TAAGATCGAT GCGACCACGC TGGAATGGGG AACGCCATTT TATTCCAAGG TCCAAACCTC TGCGGCGGTT GGCGAAGCCC CTGATATCAT GACGTATCAC GCCAGCCGCA TCCCGCTAGC GGTGAAGCAG GGCATTCTGC AGGAAATCAC CGCCGACGAC TGGAAGACGA TGGGCCTCGG ACGATCTGAC TACGCCCCCG CGACTTGGGA GGCTGTGAGC ATCGACGGCA AACAGTATGC GGTGCCGCTC GATACACACC CAATCGTCCT TTATTATAAC AAGGACCTGC TCAAGAAAGC CGGAGTGCTC GGCGACGACG GCAAGCCGAA GGGCATGGAC TCGCGTGAGA ACTTCACCGC GACGCTGAAG GCCTTGAAGG CCGCTGGGGT CAAGTTCCCG CTTGGCTCGG TGACTGCGGA CGGCAACTTC ATGTTCCGCA CCGTCTATTC CTTCATGGGC CAGCAGGATG GTGAGCTCAT GACGGACGGT GAGTTTCTTG CTGGCGACAG CGCAAAGAAG CTCGAAAACT CTCTTGCCGT TCTGTCCGAA TGGACGAAGG AAGGGCTTCA ATCCACCTAT ACCGACTACC CTGCGACCGT GGCGCTCTTC ACATCGGGTG AAGCTGCGAT GATGATCAAC GGGGTTTGGG AAGTCCCCAC TATGACGGAC CTCAAGAACA ACGGCAAGCT CTTCGAATGG GGAGCCGTCG AACTCCCTGT AATCTTCGAT CATCCCTCCA CCTACGCCGA CAGTCACACC TTCGCACTCC CTGCCAACAA GGGCGAGGAG ATGAGTCCCG AGAAGCGCGC CGCGGTCCTC GAGGTCATGA GCTGGATGTC AAAGAATTCG TTGTTCTGGG CGACCGCGGG GCATATCCCC GCATATGGTC CGGTCACGAA CTCGGCCGAG TACAAGGCGA TGGAGCCGAA CCACACATAT TCTTCGCTCA CCGCGAACAT CATCTTCGAT CCCAAGACTC CGCTGGCGGG CATCGCTGGG CCAATTTTTG ACGTGATGTC GAATTTCTTC GTGCCGACGC TCAATGGTGA AATGGAGCCC GCGAAAGCGG TCGAGGAGAT CAAGGCCGGT TTGGCCGAGC TTTGA
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Protein sequence | MPNWFKLTKA VLLAGGLMTS VAHAEETVTW WDFFGGGDGV RMKQLVADFN EAHKGKIKID ATTLEWGTPF YSKVQTSAAV GEAPDIMTYH ASRIPLAVKQ GILQEITADD WKTMGLGRSD YAPATWEAVS IDGKQYAVPL DTHPIVLYYN KDLLKKAGVL GDDGKPKGMD SRENFTATLK ALKAAGVKFP LGSVTADGNF MFRTVYSFMG QQDGELMTDG EFLAGDSAKK LENSLAVLSE WTKEGLQSTY TDYPATVALF TSGEAAMMIN GVWEVPTMTD LKNNGKLFEW GAVELPVIFD HPSTYADSHT FALPANKGEE MSPEKRAAVL EVMSWMSKNS LFWATAGHIP AYGPVTNSAE YKAMEPNHTY SSLTANIIFD PKTPLAGIAG PIFDVMSNFF VPTLNGEMEP AKAVEEIKAG LAEL
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