| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5380 |
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| Symbol | |
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| ID | 5319682 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009621 |
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| Strand | + |
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| Start bp | 346636 |
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| End bp | 347436 |
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| Gene Length | 801 bp |
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| Protein Length | 266 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640777150 |
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| Product | conjugal transfer protein TrbJ |
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| Protein accession | YP_001314082 |
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| Protein GI | 150377487 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5314] Conjugal transfer/entry exclusion protein |
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| TIGRFAM ID | [TIGR02780] P-type conjugative transfer protein TrbJ |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.231128 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGCAGC GATACTCAAA AAATAGTTGG TTCGCTGGTT CCATGGTCGC TTCGATGACA
ATCGTCGCTG CCCTGCCGGT TCACGCCGGC ACGGCTACCG GTGCGGCAAC GGAGTGGACG
CAAGTACTCA ACAACGCAGA ACTGGTGTCC CTTGTAGGTC AATCTGGTGA GCAAATTCAG
AACCAACTCA CCAAGATTAG CCAGCTATCC CAACAGATCG AAACACAGCT GAACATCTAT
CGGAATCTGC TGCAGAACAC GGCCGCCCTG CCATCGCACA TGTGGGGGCA GGTCGAGAAC
GATCTCAATC GGCTCCGTAG CATCGTCGAC CAAGGGCAGA GCATAGCCTT CTCGATGGGC
AATGCTGACG ATGTGCTGCA GCAGCGGTTT GCAAGCTATG CCGACCTAAG AACAAACCTG
CCGGCCAATG AGACGTTCTC CGCGACCTAT CAAACCTGGT CGGACACCAA CCGCGACACG
ATCGCCAGCA CGTTAAAGGC GGCAAGTCTC ACGGCCGATC AGTTCGAGAG CGAGGAAAGC
GCAATGTCCT CCCTTCGGTC AATGTCCGAA ACGGCGGATG GCCAGATGAA GGCGCTGCAG
ATCGGACACC AGATCGCCGC TCAGCAGGTG GCGCAGATGC AGAAGCTTCG CGGTCTCGTC
TCACAACAGA TGACGCTAAT GGGAACCTGG CTACAGACCG AGCAGACCGA TAAGGATCTG
GCTCAGGCGA GGCGGGAAAA GTTCTTCAGA GCCGAGGTGA AGAGTATTCC GGAGGGGCAG
AAGATGGAGC CCCGCTGGTG A
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| Protein sequence | MPQRYSKNSW FAGSMVASMT IVAALPVHAG TATGAATEWT QVLNNAELVS LVGQSGEQIQ
NQLTKISQLS QQIETQLNIY RNLLQNTAAL PSHMWGQVEN DLNRLRSIVD QGQSIAFSMG
NADDVLQQRF ASYADLRTNL PANETFSATY QTWSDTNRDT IASTLKAASL TADQFESEES
AMSSLRSMSE TADGQMKALQ IGHQIAAQQV AQMQKLRGLV SQQMTLMGTW LQTEQTDKDL
AQARREKFFR AEVKSIPEGQ KMEPRW
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