Gene Smed_5116 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_5116 
Symbol 
ID5319418 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009621 
Strand
Start bp68395 
End bp69063 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content63% 
IMG OID640776894 
Productputative CheW protein 
Protein accessionYP_001313826 
Protein GI150377231 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0835] Chemotaxis signal transduction protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.119327 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0201164 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGACAC CTTCCCGTCC CGCTCTGCGC TCTCTCGACT GGACTGCCGT CAGAAGCCGT 
ATGGCAGAAG CGATAGAGCA GACGGAAGCG CATTTGAAAG CCGCGCAACA AGACGCGGAT
GAGCAATCCG AGCGACGAGC GCCGCGCCCG GCCGTTGATG TGTCCACGGG ACGAAGCGAG
GAAGCGACGG TCGGCGCAGT GATCTTCATG CTGGCGGATC GCCGGTTCGC GTTGGAGATC
CGATACGTTT GCGAAATCGT TTCCAAGGCA CGCATCAGCC CGCTCCCCGG AATGCCCGCC
CACGCCTGCG GCGTCTACGA CTTGCGCGGT CAACTGCTTC CCGTCTTCGA CCTGCTCGGA
CCGCTCGATC TGCCGCGAAG GGCCGGCGTC GGCGACGATT GGGCAATCGT CTGCGGACAA
GAGCAGCCGG AGTTTCTCAT CCTATCCGAA GCCGCCCCCG AAATCCTCAT GCTCCCCCTG
GAGGAGATCG GCGCAGCGGA GCCCGCCCCA GGCAATGCAT GGCAATGGGC AACCATGAAA
AACGGCTTGG TCATTGTCGA CGGCCGGCTC CTTCTGGATG ACCGCCGCTT CTACCTTGAC
GACGAGCAGA CCGCCGTCAG TGACGAGACG GAAAGTACGG AGTTCCAAGA TGCCCCGATT
GGCGAATAG
 
Protein sequence
MTTPSRPALR SLDWTAVRSR MAEAIEQTEA HLKAAQQDAD EQSERRAPRP AVDVSTGRSE 
EATVGAVIFM LADRRFALEI RYVCEIVSKA RISPLPGMPA HACGVYDLRG QLLPVFDLLG
PLDLPRRAGV GDDWAIVCGQ EQPEFLILSE AAPEILMLPL EEIGAAEPAP GNAWQWATMK
NGLVIVDGRL LLDDRRFYLD DEQTAVSDET ESTEFQDAPI GE