| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5083 |
|---|
| Symbol | |
|---|
| ID | 5319385 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009621 |
|---|
| Strand | - |
|---|
| Start bp | 30856 |
|---|
| End bp | 32169 |
|---|
| Gene Length | 1314 bp |
|---|
| Protein Length | 437 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640776863 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001313795 |
|---|
| Protein GI | 150377200 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.418338 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGACGA TCACAGTGGA CGATGCGCTC GACCGCGCCG GGACAGGCGC GTATCAGCGC
CGGCTCATGG CCATATTCGG GCTGGTGTGG GCGGCCGATG CGATGCAGGT GCTGGCGGTC
GGCTTCACCG CCGCATCGAT CGCCGCAACT TTCGGTCTTA CGGTCCCGCA GGCGCTGCAG
ACCGGTACCC TGTTCTTCCT TGGCATGCTG CTTGGCGCCG TCTCCTTCGG CAAGCTCGCC
GACCGGATCG GCCGTCGTCA TGTCCTGATC GTCACCGTCT CCCTGGATGC CCTCTTCGGC
CTGCTTTCGG TTTTTGCGCC GAATTTTGCC TTCTTGCTTC TGCTGCGCTT TCTGACAGGC
GCTGCAGTCG GCGGTACATT GCCGGTCGAC TACGCGATGA TGGCGGAGTT CTTGCCGGCC
CGCAATCGCG GCCGTTGGCT CGTCATGCTG GAGGGATTCT GGGCCGTCGG CACGCTCGTC
GTCGCGCTCG CCGCATGGGC TGCCAGTCTT GCCGGTGTCG CCGATGCCTG GCGCTACATC
TTTGCCGTGA CGGCGATCCC GGCGCTGATC GGAGTCGGCC TGCGTTTTCT GGTGCCGGAA
TCGCCGCTCT ATCTCCTGCG CCGCGGAAAA GCCCATGAAG CCAAGACCAT TGTCGAGCGT
ATCCTCCTCG TAAACGGCAA GAGTAAACTG GGCGCTGACG TGTCGCTGGT TTCGCCGCCG
CCGGTTGCGA GCGAAGGCAT CTTCTCCGCG GATATGCGCA GGCGCAGCCT GTTGATCCTG
GCGATCTGGT TCCTCGTCTC GGTATCCTAT TACGGCGTTT TTACCTGGAT GCCTCCGCGA
CTGGCGGGCG AGGGCTTCGG GTTCGTTCGC GGCTATGGCT TCCTCGTCTT CCTGGCCTTG
GCGCAGATAC CCGGCTATGC CCTCGCGGCC TATGGCGTGG AGAAGTGGGG CCGCCGGCCG
ACGCTGATCG GCTTCTGCCT GCTGTCGGCG CTTGGCTGCC TGCTCTTTGT GGCGGCCGAA
TCGGGCACGC TGATCGGTGC CTCTCTCCTG ACCATGAGCT TCGCCCTGCT TGGCACCTGG
GGTGCGCTTT ATGCCTATAC GCCGGAACTC TATCCTACCG CATCGCGGGC AACGGGCATG
GGCGCGGCGG GCGGCATGGC GCGGCTCGGG GGTCTTCTCG CGCCCTCGCT GATGGGGCTC
GTCGTGGCGC AGAGCTTCAC TCTTGCAGTC GGTATTTTCT CGGCCTTCCT GCTCGCGGCA
GCCCTGGCCG CCTTTCTCAT CGACACCGAG ACGCGTCGCG CGTCTCTCGC TTGA
|
|---|
| Protein sequence | MTTITVDDAL DRAGTGAYQR RLMAIFGLVW AADAMQVLAV GFTAASIAAT FGLTVPQALQ
TGTLFFLGML LGAVSFGKLA DRIGRRHVLI VTVSLDALFG LLSVFAPNFA FLLLLRFLTG
AAVGGTLPVD YAMMAEFLPA RNRGRWLVML EGFWAVGTLV VALAAWAASL AGVADAWRYI
FAVTAIPALI GVGLRFLVPE SPLYLLRRGK AHEAKTIVER ILLVNGKSKL GADVSLVSPP
PVASEGIFSA DMRRRSLLIL AIWFLVSVSY YGVFTWMPPR LAGEGFGFVR GYGFLVFLAL
AQIPGYALAA YGVEKWGRRP TLIGFCLLSA LGCLLFVAAE SGTLIGASLL TMSFALLGTW
GALYAYTPEL YPTASRATGM GAAGGMARLG GLLAPSLMGL VVAQSFTLAV GIFSAFLLAA
ALAAFLIDTE TRRASLA
|
|---|
| |