| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3358 |
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| Symbol | |
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| ID | 5324242 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 3557846 |
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| End bp | 3558661 |
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| Gene Length | 816 bp |
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| Protein Length | 271 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640792309 |
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| Product | tetratricopeptide TPR_4 |
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| Protein accession | YP_001329014 |
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| Protein GI | 150398547 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | [TIGR01168] Gram-positive signal peptide, YSIRK family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.718019 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAACACA CTTCCTCCTC TTCCTTGCGG CGCCGCGCGG CGGGAGCCGC CGCGGTGATG
GTCGCTCTGG CGCTGGCCTC CTGCGCCGGC CAACAGGGCA GGGAAGAGCT GACGACCGGC
TCGATCCCGA AACTCTCCAG GCCGGTGCAG TCGATGAACG CGACGGAGCT GGCCGCCGCG
GCCGAGCGCA TCGGCCAGGC CTATGAGCGC AACCCGAAGG ACCGGGAGGC GGGTCTGAAC
TATGCCAATC TCCTGCGCAT GACGGGCCGC AACGAGCAAG CGCTTGCCGT CATGCAGCAG
GTGGCAATCT ACCACCCGGC CGACCGGGAG GTCCTCGGCG CCTACGGAAA GGCCCAGGCC
GCCGCGGGAC AGCTCGAACA GGCGCTCACG ACGATCGGCC GCGCGCAGAC CCCTGACCGG
CCCGACTGGA AGCTGAAATC CGCGGAAGGC GCCATTCTCG ACCAGCTTGG CCGCTCCACC
GAGGCGCGGC TGCGCTACCG CGAAGCGCTG GACCTCAAGC CCAACGAACC ATCTGTCCTG
TCCAATCTCG GCATGTCATA CCTGCTGACG AAGGATTTGC GGACAGCCGA GACCTACCTC
AAATCTGCAG CGAGCCAGCC GGATGCCGGC AGCAGCGTGC GCCAGAACCT CGCTTTGGCC
GTCGGTCTGC AGGGACGCTT CCAGGAAGCC GAGACGATCG CCCGGCAGGA ACTGACATCG
GAGCAGGCGG AAGCCAACGT CGCCTATCTG CGCTCGATGC TATCGCAGCA GGGCGCCTGG
AAACAGCTCG CACAGGCGGA CGCGAAGGCG GATTGA
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| Protein sequence | MQHTSSSSLR RRAAGAAAVM VALALASCAG QQGREELTTG SIPKLSRPVQ SMNATELAAA
AERIGQAYER NPKDREAGLN YANLLRMTGR NEQALAVMQQ VAIYHPADRE VLGAYGKAQA
AAGQLEQALT TIGRAQTPDR PDWKLKSAEG AILDQLGRST EARLRYREAL DLKPNEPSVL
SNLGMSYLLT KDLRTAETYL KSAASQPDAG SSVRQNLALA VGLQGRFQEA ETIARQELTS
EQAEANVAYL RSMLSQQGAW KQLAQADAKA D
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