| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2438 |
|---|
| Symbol | |
|---|
| ID | 5323299 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | - |
|---|
| Start bp | 2518066 |
|---|
| End bp | 2519691 |
|---|
| Gene Length | 1626 bp |
|---|
| Protein Length | 541 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640791376 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001328105 |
|---|
| Protein GI | 150397638 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
|---|
| TIGRFAM ID | [TIGR02323] phosphonate C-P lyase system protein PhnK |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGACGG ACAAACTTCT CACCGTCTGC GGCCTTTCGC TTGAAGTTGC GGGATCCGGC
CATCAGGTGG TCAAGTCGGT TTCCTTCGAC CTCGCGCCGG GCGAGATCTT CGGGATCGTC
GGCGAAAGCG GCTCCGGCAA GACGCTGGCG ACCAGATCGC TGATCTCGCT GCTGCCACCG
AACATCACGG TCACCGGCGG ATCGGTGACC TACAAGGGCC GCGACGTGCT GAAGCTGAAG
GAAAAAGAGC TACGTCATCT GCGCGGTGCA GAGATCGGCG TGGTCTTCCA GGAGCCGATG
ACCTCGCTCA ATCCGTCGAT GACGATCGGC CGGCAGCTGG AGGAGGGGCT GGTCCTGCAC
ACCAAGGCCC CGGCGCAGGA GCGACGCTTG CGCATCCTCG ACATGTTGAA GCGGGTGGGC
ATCCGCGATC CGGAGGGGGC GCTTGCCTCC TATCCGCACG AGTTTTCGGG AGGCATGCGC
CAGCGCATCA TGCTCGCCTC CGTCATGCTT TTGAAGCCGG CGCTGCTGAT CGCCGATGAA
CCGACCACCG CGCTCGACGC CGTGATCCAG CGCGACGTGA TGGAACTGAT GGTGGAACTG
ACGCGCGCGG AAGGGACGGC CGTGCTGCTG ATCAGCCACG ATCTGCCGAT GGTGGCGCGC
TACACGAGCC GCATCGTCGT GATGGAAAAG GGTGCGATCG TCGAACAGGG CCGCACCGAA
GACCTGCTCA CAGCACCGCA GCATCCCTAT ACGCGGAAGC TCTCGTCGCT GCCCTTTCGC
GGCGAGCCAC GCCGGATCGA CACGAGCAAG GCGCCCATGA TCTCGGCTCG CGAAATCATC
GTCGACTATG CCGGCCGGAA GTCCCTGTTC AGAAAGAACA AGCCGAAGCG GGCGCTGCAT
GGCGTCAGCA TCGACATATA CGAAGGCGAG GTCGTTGCAC TCGTCGGCGG TTCCGGCTCC
GGCAAGACGA CGCTCGGCCG CACCATTGCC GGCCTCGTCA AGGAAGACGA GGGCCGCATC
CAGTTCCAGG GACGGCTGCG CACCGAAAAC TGGGCCGATT ATCGCCTCAA TTGCCAGATG
GTTTTTCAGG ATCCCTATTC ATCACTCGAT CCGCGCATGA CCATCCAGGC GCTGGTCGAG
GAGGCGCTGA GACTGGTGCC GGGCCTCGAC GGTAACGCCA AACGTAAGCG TTCCCTGGAG
ACGCTGGAGG AGGTCGGCCT CGGCATGGAG TATGCCGGCC GCTACCCGCA CGAGCTTTCC
GGAGGCCAAC GCCAGCGCGT TGCCATTGCG CGTGCGATCG CGCGCCGGCC GCGCTTCCTG
ATCGCGGACG AACCGGTTTC CGCGCTCGAC GTAACGGTCA GGGCGCAGGT TCTCGATCTC
TTCTCGGATC TGCAGAAACG CTACGGCTTT TCCTGCCTGT TCATCAGTCA CGACCTCGGC
GTCGTCGAAC AGGTCGCAGA TCGCGTCGTT GTCATGCAGG ACGGTCGGAT CATCGAGGAG
GGGGCCCGGG ATTCGATTTT CGACAGCCCG AAGGAGGCCT ATACGCGCCG GCTTCTTTCG
GCGATTCCCG CCCTCGACCA GAATGAAAAC GGCGGCGTGA CTCTCAAATG GTGTCTGGAG
AATTGA
|
|---|
| Protein sequence | MTTDKLLTVC GLSLEVAGSG HQVVKSVSFD LAPGEIFGIV GESGSGKTLA TRSLISLLPP
NITVTGGSVT YKGRDVLKLK EKELRHLRGA EIGVVFQEPM TSLNPSMTIG RQLEEGLVLH
TKAPAQERRL RILDMLKRVG IRDPEGALAS YPHEFSGGMR QRIMLASVML LKPALLIADE
PTTALDAVIQ RDVMELMVEL TRAEGTAVLL ISHDLPMVAR YTSRIVVMEK GAIVEQGRTE
DLLTAPQHPY TRKLSSLPFR GEPRRIDTSK APMISAREII VDYAGRKSLF RKNKPKRALH
GVSIDIYEGE VVALVGGSGS GKTTLGRTIA GLVKEDEGRI QFQGRLRTEN WADYRLNCQM
VFQDPYSSLD PRMTIQALVE EALRLVPGLD GNAKRKRSLE TLEEVGLGME YAGRYPHELS
GGQRQRVAIA RAIARRPRFL IADEPVSALD VTVRAQVLDL FSDLQKRYGF SCLFISHDLG
VVEQVADRVV VMQDGRIIEE GARDSIFDSP KEAYTRRLLS AIPALDQNEN GGVTLKWCLE
N
|
|---|
| |