Gene Smed_2166 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_2166 
Symbol 
ID5323026 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp2236676 
End bp2237419 
Gene Length744 bp 
Protein Length247 aa 
Translation table11 
GC content62% 
IMG OID640791104 
Productresponse regulator receiver protein 
Protein accessionYP_001327834 
Protein GI150397367 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATGACG AGGCTGTCGG GGATACGTTC CGAACTCTGA TGTCCACCCT GATGACGTTC 
GATTATGTCG TCGTCTTCGC GTATCGCGGC AAGGAACGGC CGCTCGATCT GTACAGCACC
TTCGACGCCG AGGATCATGT GCTCTTCGTG ACCCTCTACC AGGCCGGGCC TTACCTGCTC
GACCCGTTCT ATCATGCCGC GCGTGCGCCC AAACCCGGCG TGTGGCGCAT GCGGGAACTG
GCTCCCGACC GCTTCTTTTC AAGCGAATAT TACCGGACCT ATTATGTCCA GACGGGGCTT
GCCGAGGAAG TCGGCTTCTT CGTTCCCGTC AGTGAACAGG TCACCGTCGT CCTTTCTTTG
ATGCGGCGCG AGGCGACGGG GGTATTCGGC GCCGCGGAGT TCGCGCTGCT CAGGAAGGCG
GAGCCGCTGG TGGCGGCCCT CGTGCGGCAT CATTGGGCGG AACTCGACCG CCGCTTCGAT
ACCGCGCTTG CAAGAACGGA GAGGGGCCGC CGCAAATCGG TGCATCCGCC GGCAGACGGC
GTCTGGCGGC ATCTCAATCT CACAGAGCGC GAGGCGGCGA TCATCGAACT CGTGCTGCAG
GGGCATTCCT CCGAATCGAT CGGACTGAAG CTCGGGATCT CGACGGGGAC CGTGAAAGTC
CACCGCCGCA ACGTCTACCG GAAGCTCGGC ATTTCCTCGC AGACACAGCT CCTGTCTCTC
TACATCAAGA ATCTCGGTCA CTGA
 
Protein sequence
MDDEAVGDTF RTLMSTLMTF DYVVVFAYRG KERPLDLYST FDAEDHVLFV TLYQAGPYLL 
DPFYHAARAP KPGVWRMREL APDRFFSSEY YRTYYVQTGL AEEVGFFVPV SEQVTVVLSL
MRREATGVFG AAEFALLRKA EPLVAALVRH HWAELDRRFD TALARTERGR RKSVHPPADG
VWRHLNLTER EAAIIELVLQ GHSSESIGLK LGISTGTVKV HRRNVYRKLG ISSQTQLLSL
YIKNLGH