| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1067 |
|---|
| Symbol | tpiA |
|---|
| ID | 5321913 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 1135120 |
|---|
| End bp | 1135890 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640790010 |
|---|
| Product | triosephosphate isomerase |
|---|
| Protein accession | YP_001326755 |
|---|
| Protein GI | 150396288 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0149] Triosephosphate isomerase |
|---|
| TIGRFAM ID | [TIGR00419] triosephosphate isomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.331655 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCCCG ATATCCGCCC GCTCGTCGCC GGCAATTGGA AGATGAATGG AACGCGTGCG
TCCCTGGACC AGATCAAGGC AATCGCCGAG GGCGTGAAAG GCGGTCTTTC CGCGAGGGTG
GACGCCCTTA TCTGCCCGCC GGCAACCTTG CTCTACGTCG CGACGGCGCT TTGCGACGAC
AGCCCGTTGT TGATCGGCGC GCAGGACTGC CATCAGAAAC CGTCGGGAGC CCATACCGGC
GAAGTCTCTG CCGAAATGAT CGCGGATTGC TTCGGGACCC ACGTGATCGT CGGCCATTCA
GAGCGGCGCA GCGATCATGG GGAGGGAGAC GCCCTGGTTT GCGCCAAGAC CGAAGCCGCG
CACGGCGCCG GTCTGGTCGC CATCGTATGC ATCGGCGAGA CGGAAGGGGA GCGCAAGGAG
GGCCGGACGC TCGATATTCT GAAGCGCCAG CTCGCCGGAA GCCTCCCGGA TCAGGCGACG
GCCGAAAACA CGGTAATCGC ATATGAGCCC GTCTGGGCGA TCGGCACCGG TCTCACGCCC
ACTGCATCCG ACGTCGAGGA GGCCCATGCC TTCATGCGCC GCGAACTCGT GGCGCGCTTC
GGCGCGGAAG GCAGCAAGAT GCGGATTCTC TATGGAGGGT CCGTCAAACC CTCGAATGCC
AGGGAACTCA TGGGGGTCAC CAATGTCGAC GGCGCCCTGA TCGGCGGCGC GAGCTTGAAA
GCGGATGATT TCCTCGCCAT CTACAGGGCC TATGAAGAAT TGACCGCCTG A
|
|---|
| Protein sequence | MTPDIRPLVA GNWKMNGTRA SLDQIKAIAE GVKGGLSARV DALICPPATL LYVATALCDD
SPLLIGAQDC HQKPSGAHTG EVSAEMIADC FGTHVIVGHS ERRSDHGEGD ALVCAKTEAA
HGAGLVAIVC IGETEGERKE GRTLDILKRQ LAGSLPDQAT AENTVIAYEP VWAIGTGLTP
TASDVEEAHA FMRRELVARF GAEGSKMRIL YGGSVKPSNA RELMGVTNVD GALIGGASLK
ADDFLAIYRA YEELTA
|
|---|
| |