| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0884 |
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| Symbol | |
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| ID | 5321722 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 947312 |
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| End bp | 949492 |
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| Gene Length | 2181 bp |
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| Protein Length | 726 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640789821 |
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| Product | type I secretion system ATPase |
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| Protein accession | YP_001326574 |
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| Protein GI | 150396107 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
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| TIGRFAM ID | [TIGR01846] type I secretion system ABC transporter, HlyB family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATAGAG TAGCGACATC ATCACCCGGC GAAGTACCTG CAGAACGCAT CGGAGAAAGG
CAGCCGGACA GCGGCCTGTC GGCGCTTTCC GCCATCGCCG GCTATTACCG CCTGCCGGCG
AATGCCGGGG CAATTGCCCG TCAACTGGCC ATCACCGGCC CCGCCGGTAC CGACGACCTC
CTGAGAGCCG CACGCCTGAT CGGCCTCAAA GCCCGGTCGA TTGCCGCGAC GGCCGGCCGT
ATCGCTACGA TGCCGGTGCC GGCAATCGCC TGCCTCACGG ATAGTTCCTT CGCCGTCTTC
GGCGGCAAAT CCGGCGAAGG GAGCTTTCGG CTCGTCAATC CGGTCGATTT TTCCAGCCGC
GATGTCGATA CCGCCGAACT GCTGCGGCTC ACGGGCGGAC GGTTCATCCT GATTCAGCGG
CGCTTCGGCG GACCGGGCGC TGATCCGGCA GCATTCGGTT TTCGCTGGTT CCTGCCGTCG
ATCTGGCGCT ACCGCCGCGC CTTCGGACAT GTGTTGATCG CATCGCTGTT CGTCCAGCTC
TTCGCACTGA TCACGCCGCT TTTCTTCCAG GTCGTCGTCG ACAAGGTGCT GGCGCATCGC
AGCTATTCGA CGCTGATCGT GCTCGTCGTC GGGCTTGCCG TCGTCGGCCT CTTCGATGTC
GTGCTCCAAT ATCTGCGCAC CTATGCATTG TCGCACACCA CCAACCGCAT CGATGTCGAG
TTGGGGCGCC GGCTGTTCCG GCATCTTCTC AGCCTGCCGC TCGACTATTT CGAGACGCGA
CCCACCGGCC AGACCGTCGC CCGCATCCGC GAACTCGAAA CCATCCGTGC CTTCCTCACT
GGCCAAGGGC TCTTTTCCGG CCTCGATCTG ATCTTCACCT TCGTCTTCAT CTTCGTGCTC
TTCAGCTATT CCAAGACGCT TGCCTGGATC GTCGTCGCCT CGATCCCCTT CTATCTCGCC
ATCGGTTTTC TCGTTCGTCC GTTCCTGAAG GAGCGCATCG ACGAGAAGTT CGAACGCGGA
GCCTGGAGCC AGCAGTTGTT GGTAGAAACG GTGGTCGGCG TGCAGACGTT GAAGGCAGCG
GCGGTCGAGC CCGTCGTATC CGCCGATTGG GAGGAGCGGC TCGCAGCCTA TGTGAAATCG
TCCTTTCTCG CGACGATGCT TGCCGCAAAG GGCCAGAATG CCGTTCAATA CATCAACAAG
GTGACCAGCG CCGCCCTGCT GCTTTTCGGC GCACAGGCGG TGATCGACGG CCATTTGACG
GTCGGGGCGC TCGTCGCCTT CAACATGATC GCGGGCCAGG TCTCGCAGCC TATCCTTCGT
CTTTCACAGC TTTGGCAGGA TTTTCAGCAG GTCCAGGTCT CCGTTTCGCG CCTCGCCGAC
ATCCTCAATG CGCCGGCGGA GCCACGCCCC GCCGCGACCA TCAGCCTCCC GCCCCCACGC
GGCGCCATCG CCTTCAAATC GGTCGGCTTT CGCTACGCGC ACAATGCTCC GGACGTGTTG
AAAAATGTGA CGCTCGCGGT TCGCCCCGGC GAGGTGCTTG GCATCGTTGG ACCTTCAGGA
TCGGGGAAAT CGACGCTGAC GAAGCTCGTA CAGCGCTTCT ACATTCCGCA AACCGGTCAG
GTCTTCGTCG ATGGCCACGA TATCGCCCAG GTCGACCCGG CCTGGCTGCG CGCCGGAATC
GGCGTCGTGC TCCAGGAGAA CATGCTCTTC AACCGCTCGA TCCACGACAA TATCGCACTG
GCCAATCCGG CGATGTCGCG CGCGGCGGTG ATGCGGGTCG CGCGCCTTTC CGGCGCGGAC
GAATTCATCG CGAAACTTCC GCGCGGTTAC GACACGCAGA TCGAGGAGCG CGGTGCCAAT
CTCTCCGGCG GTCAGCGGCA GCGGCTGGCG ATCGCTCGCG CGCTCGCCAC GAATCCCCCG
ATCCTTATTC TCGACGAGGC CACGAGTGCC CTCGATTACG AGAGCGAGCG TATCGTTCTC
GCCAATATGC GCGAGATCGT GAAGGGCCGC ACCGTGATCA TCATCGCCCA TCGCCTCGCG
ACCGTGCGCC ACTGCGATCG GATCATCGGC ATGAAGGACG GCCGCATCAT CGAGGAAGGC
TCCCATGAGG TCCTGGTCGC CCGACCGAAC GGGCTCTATT CGCATCTCTG GCAGCTCCAG
ACAGGGGCCG CACAGGCATG A
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| Protein sequence | MHRVATSSPG EVPAERIGER QPDSGLSALS AIAGYYRLPA NAGAIARQLA ITGPAGTDDL
LRAARLIGLK ARSIAATAGR IATMPVPAIA CLTDSSFAVF GGKSGEGSFR LVNPVDFSSR
DVDTAELLRL TGGRFILIQR RFGGPGADPA AFGFRWFLPS IWRYRRAFGH VLIASLFVQL
FALITPLFFQ VVVDKVLAHR SYSTLIVLVV GLAVVGLFDV VLQYLRTYAL SHTTNRIDVE
LGRRLFRHLL SLPLDYFETR PTGQTVARIR ELETIRAFLT GQGLFSGLDL IFTFVFIFVL
FSYSKTLAWI VVASIPFYLA IGFLVRPFLK ERIDEKFERG AWSQQLLVET VVGVQTLKAA
AVEPVVSADW EERLAAYVKS SFLATMLAAK GQNAVQYINK VTSAALLLFG AQAVIDGHLT
VGALVAFNMI AGQVSQPILR LSQLWQDFQQ VQVSVSRLAD ILNAPAEPRP AATISLPPPR
GAIAFKSVGF RYAHNAPDVL KNVTLAVRPG EVLGIVGPSG SGKSTLTKLV QRFYIPQTGQ
VFVDGHDIAQ VDPAWLRAGI GVVLQENMLF NRSIHDNIAL ANPAMSRAAV MRVARLSGAD
EFIAKLPRGY DTQIEERGAN LSGGQRQRLA IARALATNPP ILILDEATSA LDYESERIVL
ANMREIVKGR TVIIIAHRLA TVRHCDRIIG MKDGRIIEEG SHEVLVARPN GLYSHLWQLQ
TGAAQA
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