Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_0243 |
Symbol | |
ID | 5321075 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | + |
Start bp | 267436 |
End bp | 268173 |
Gene Length | 738 bp |
Protein Length | 245 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640789178 |
Product | regulatory protein LuxR |
Protein accession | YP_001325937 |
Protein GI | 150395470 |
COG category | [K] Transcription |
COG ID | [COG2771] DNA-binding HTH domain-containing proteins |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.537224 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGAGATGT CGCGGTCAGA CGCAGTCTGG TCTTCGGAGA CCGCTGCGCG GCGAATGTAT GGTCGCAGAA TATCGAGGGA ACAACTGATC CGAAGGCTGG GCGAGTTGGC TTCGGGTACG GGCCTCGGCA ACGGACTGGC CGTGCTGACG GAATATGTCG GCGCCACGCA TTACCTTCTC GCCCGGCACG ATGTTTCGCA GGACGGTGGC CTCGATTTTG TCGTCTGTTC CGACTGGCCG TTCGACATCG TCCGGCGCCT CTCCGGCATC ATCGCGGGGC TCAATTCCAA GACCACGGAA CTGGAAAAAT GCCGCGCACA GCTGCAGCCG GTCTTCCATG CGATGCCCGA CGATATCGGT TTGCCACGAG GCGTCAGCCG CAGCTATTGC GCTGTCACCT TCAGCATCGG GCCGACGCGG TTTTCCTTGA TGCTGCTCTT CCCCGAGGAC GTTATCCTCT CGCAAGACGC ACTGCGCGAT GTCGCGGTGC TTGCCGGATA CGTCGCCAGT CACAAGATCA AGGCCGACGT GCGGCATGAT CGGGAATGCG AGTTGACCGA ACGTGAGCTC GAATGTCTGT TCTGGATTGC CGAAGGCAAG ACCAGCGACG AAATCGCGGT CATACTCGGG ATCTCCCGCA ACACGATAAA CAATTACATC ACCAGTGTGA TGCGCAAGAC GGCGACGCGA ACGAGGTCCG AGGCGATCGC TCACGCGGTG CGCAACAATC TGGTTTAG
|
Protein sequence | MEMSRSDAVW SSETAARRMY GRRISREQLI RRLGELASGT GLGNGLAVLT EYVGATHYLL ARHDVSQDGG LDFVVCSDWP FDIVRRLSGI IAGLNSKTTE LEKCRAQLQP VFHAMPDDIG LPRGVSRSYC AVTFSIGPTR FSLMLLFPED VILSQDALRD VAVLAGYVAS HKIKADVRHD RECELTEREL ECLFWIAEGK TSDEIAVILG ISRNTINNYI TSVMRKTATR TRSEAIAHAV RNNLV
|
| |