Gene Smal_1942 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmal_1942 
Symbol 
ID6476049 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStenotrophomonas maltophilia R551-3 
KingdomBacteria 
Replicon accessionNC_011071 
Strand
Start bp2184154 
End bp2185197 
Gene Length1044 bp 
Protein Length347 aa 
Translation table11 
GC content71% 
IMG OID642731124 
Producttransport system permease protein 
Protein accessionYP_002028329 
Protein GI194365719 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0609] ABC-type Fe3+-siderophore transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.543931 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.0358565 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTCCGG CGGATCGGCG CCGCCGTCGC GGGCGGACGA TGTTGCTGGT GGCGTTGCTG 
GCACTGCTGG GGGCAGTGCT GGCCTCGTTC GCCGTGGGCC CGCTGCGGCT GCCGCCGATG
GAGGTGATGC AGGCGTTGGC GGTGAAGCTG GGCCTGCTCG ATCCGCAGGC GGTCAGCAGC
CGCGACCTCG CCGTGGTCTG GCAGCTGCGT ATTCCGCGCG CGCTGTTGGG CGCGATGGTC
GGTGCGTCGC TGGCGATGGC CGGTGCCAGC CTGCAGGGCC TGTTCGGCAA TCCGCTGGCC
GATCCCGGCA TTGTCGGTGT CAGCCAGGGC GCCGCGCTGG GTGCGGTCGC CGCCATCGTG
CTCGGCGCTG CCGGTGCGGC TGGCTGGCTG GTGCCGGTGG CCGCGTTCGC TGGCGGCGCA
CTGGCAATCG GCCTGACCTA CGCATTGGCC CGGCCCGGCA AGGGCACGGG CAACGCCACG
CTGCTGCTGG TCGGTATCGC GATGGCCGCG TTCTGCTCGG CGCTGATCGG TTTCCTCACA
TATATCGCCA GCGAAAGCGA GCTGCAGTCG CTGGTGTTCT GGCAGATGGG CTCGCTGGCC
CGCGCCAACT GGGCCGATGT GGCAGCGGTG GTGCCGTTGT TCGCCATCGG TGTGTTCGCG
CTGCAGCGAT TGGCCACGCC GCTGGACATG CTGGCGCTGG GTGAGCGCCA GGCACAGCAC
CTCGGGCTGG ATGTCACCCG CACGCGTCGC CGCCTGGTGG CGTTCAGTGC GCTGCTGGTG
GGTGCGGCGG TGGCGTTTGC CGGCTCGATC AGTTTCGTCG GCCTGGTGGT GCCGCACGTG
GCGCGCCTGC TGGTCGGCCC TGGCCATCGC TGGTTGCTGC CGTTGTCAGG CCTGCTGGGC
GCACTGCTGA TCGTGGTGGC CGACACCGCC GCGCGCACAT TGGATCCGCC GGCGGAGATT
CCGCTGGGCC TGTTTTCGGC CGCACTGGGC GCACCGTTCT TCCTGTGGCT GGTGCTGCAG
CAGCGCCGCA AGGCCGCACC ATGA
 
Protein sequence
MSPADRRRRR GRTMLLVALL ALLGAVLASF AVGPLRLPPM EVMQALAVKL GLLDPQAVSS 
RDLAVVWQLR IPRALLGAMV GASLAMAGAS LQGLFGNPLA DPGIVGVSQG AALGAVAAIV
LGAAGAAGWL VPVAAFAGGA LAIGLTYALA RPGKGTGNAT LLLVGIAMAA FCSALIGFLT
YIASESELQS LVFWQMGSLA RANWADVAAV VPLFAIGVFA LQRLATPLDM LALGERQAQH
LGLDVTRTRR RLVAFSALLV GAAVAFAGSI SFVGLVVPHV ARLLVGPGHR WLLPLSGLLG
ALLIVVADTA ARTLDPPAEI PLGLFSAALG APFFLWLVLQ QRRKAAP