| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_6836 |
|---|
| Symbol | |
|---|
| ID | 8716104 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013732 |
|---|
| Strand | - |
|---|
| Start bp | 5050 |
|---|
| End bp | 6948 |
|---|
| Gene Length | 1899 bp |
|---|
| Protein Length | 632 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003391584 |
|---|
| Protein GI | 284005765 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.00000213305 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 50 |
|---|
| Fosmid unclonability p-value | 0.0288754 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCGCG ATCAGGAGGA GTTTTTGCAG GTGCTCAACC GGCACCAGGT GGAGTATGTT
GTCATCGGGG GAAAAGCTGT CCAATCCTAC GGTAGTACCC GCAAAGCCGA CGACATCGAC
GTTTGGATAA ACCCGTCGGC TGACAACGCA AATAAGATAG TATCGTCGGT CAAAGAATTT
CTGGGGGCCA ATATGCACCC CCGCGACTTT ACCGACGATA AAATTGTGTA TTTCGGGCGT
AACCCGTACC GGATAGACAT TCACAAGGAC GTTCCGGGTC TCGGCCAGTT CCCTGACCAT
TACCCGAATC GTGTTCCGGC CCGCACCAAA GACGGCACCG ACTACACGGT TGTTTCGCCC
CACGATCTGG TTGCCAGCAA GAAAGCTGCC GGGCGACCAA AAGACTTACA GGACATTGCG
TATATAGAGG AGCGGGTATT GGGAGTCGCC CGCCAGCCGG AGCGAACGAA GATTAACCAG
CCCGCCTATG AACCGCGCAA GGTTGATTTT GAAGAGTTCA AGCAGCGTAT CAACTTAGTC
GAATACGCGA TGGATCAGGG CTACGTTAAA GACCGGCAAC GTAGCGGGGG TAACTCCGTA
GCCTTGTACA AGGACGAGGC CAAGGGACGC GACAAGATTG TGGTTTACAC CAACCAGCGG
GGCGGGGTAG ACATCTACTT CAACCCGAAT GACGGAGCCG ATAAAGGTAC GGTGGTGCAG
TTTCAGCATC GGCGTGGTAC GGGTGAGTGG AAAGACACCA TCGAAACCCT GCAACGGTAT
ATCGGCCAGG TGCCGGAGCA ACAACGACCG GCACGGCCAA CCTCACCGTC TGCCGATCAA
CCGGCACCTA CCCGCGAACA GGCAGTTGTC CGCAGCTTTG ACCTGAAACC GCTAACCGAC
GACACGTACC TGAGAGGCCG GGGATTGTCG AGCGGAACGG TCAACGCACC GGAGTTTGAA
AACACGGCGT TTAACCGGAC GTACTTCGAC CGCAGCCGGG GCAAGCAGTA CACGAATACC
GTATTCCCGA TCAAGAACGA GCAGGGAACG GTAGCCATCA TCGTGCGAAA CGATGGGTTG
AAAATGGTCG AAGGGCCTCG CGGAGACGGT ATCTGGATTT CTAATCCGAA GGTCATCGAA
CCTGGTAGCC GGGCTGATCG GATGGTCATC GCTGAAAATC CCATCGACGC GATGAGCTTT
CACCAATTAA AACCACCGGT AGAAGGGGAA AAAAGGCTTT ACCTCGGCAC GGCGGGCAAT
CTCTCATCGG GCGCACCCGA TACGGTGCAG AAGCTCATCG ACCGATACCA GCCTAAACAG
ATTGTACTGG CTAACGACAA CGATAACGGC GGTTTTCGCA ACAACATCAA CTTAGTCGGG
CGGTTGCGGT ATCCGGGTGT CGAGGAGAGC AACAACATTC AAGCGCAGTT GGCCGTACCG
ACACCAAGCC AGCTACGGCT AACAGTGTCG GTCAGCTATC CCGATCAGGC GACGGGTAAG
CAGCAGGTGC AGCAACTTAC CGAGCGGTTT TCGACGGCCC TCAACAAAAA CTCTCCCGAC
GACGAGCCGG AGGCCCGCAT CAGTGTGAAG GGCTGGCAGG GGAATCGTAC CGAGTTTGAA
GTTTCGATGC CCAACACCCG GCAAAACCTG ATTCGGACAC AAAACGAGTT GGTAGCGGCC
AAAGGGCTAA ACGAGGTGAT TGCGATAAAG CTGCCCGTTC ATAAGGACTT CACCGAGGAC
TTACAACGGA ATGAAAAACT GACATTACCA GCCCTGCCCG GTGAAGCCAA ACAGCAGGTG
GCGCAGAATC AACCCGCCGA AAGCCCGAAG ATGATGCCCA AATTCGATAT GCCTGTTCTG
TCGAACGGCC ACAACACCCC AACCGGAATG AAGCGATGA
|
|---|
| Protein sequence | MTRDQEEFLQ VLNRHQVEYV VIGGKAVQSY GSTRKADDID VWINPSADNA NKIVSSVKEF
LGANMHPRDF TDDKIVYFGR NPYRIDIHKD VPGLGQFPDH YPNRVPARTK DGTDYTVVSP
HDLVASKKAA GRPKDLQDIA YIEERVLGVA RQPERTKINQ PAYEPRKVDF EEFKQRINLV
EYAMDQGYVK DRQRSGGNSV ALYKDEAKGR DKIVVYTNQR GGVDIYFNPN DGADKGTVVQ
FQHRRGTGEW KDTIETLQRY IGQVPEQQRP ARPTSPSADQ PAPTREQAVV RSFDLKPLTD
DTYLRGRGLS SGTVNAPEFE NTAFNRTYFD RSRGKQYTNT VFPIKNEQGT VAIIVRNDGL
KMVEGPRGDG IWISNPKVIE PGSRADRMVI AENPIDAMSF HQLKPPVEGE KRLYLGTAGN
LSSGAPDTVQ KLIDRYQPKQ IVLANDNDNG GFRNNINLVG RLRYPGVEES NNIQAQLAVP
TPSQLRLTVS VSYPDQATGK QQVQQLTERF STALNKNSPD DEPEARISVK GWQGNRTEFE
VSMPNTRQNL IRTQNELVAA KGLNEVIAIK LPVHKDFTED LQRNEKLTLP ALPGEAKQQV
AQNQPAESPK MMPKFDMPVL SNGHNTPTGM KR
|
|---|
| |