| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_6378 |
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| Symbol | |
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| ID | 8730162 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Spirosoma linguale DSM 74 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013730 |
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| Strand | - |
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| Start bp | 7731303 |
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| End bp | 7733789 |
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| Gene Length | 2487 bp |
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| Protein Length | 828 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003391135 |
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| Protein GI | 284041205 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00914349 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCCAG TGCTCCGCCT TTTATTCGTT CATAGTATTC TTTTCTGGGT TGGTTCGGCC
GTTGCACAAC AGGTAGCGAC GGGCAATGGT AACCGACTGA TGGGGACGGT AATAGACGCC
ACGACCAGGC AAGTGCTTCC GTTTGCATCG GTAGCCGTTT TTACGCAGAG ACAAGGAAAA
GACAGTCTGT TGACCGGTAG CCAGACCGAT GAAAAGGGTG CCTTTGCCAT CGCCAATTTA
CCGGCGGGTA CACTAACCGC ACGGATTACA TTTGTTGGTT ATCAGCAGTT GGAACAGGTG
ATTCGAATCG CGCAGGCACA AACCGATTTG GGTACGCTGG CCCTGAAACC CGATGCCAGC
CAACTGAAGG AAGTACAGGT GACGGGTGAG AAAAGCGGCA TCGACATGAC CATGGAGAAG
CGCACTTTTA ACGTAGCCAA AAACCTGACC ACCATCGGTG GAACGGCCGA GAATGTGCTG
AAGAACGTCC CCTCCATTAC CCTCGACGAA AGCGGTAATC CAAGCCTGCG GAATATGGCA
ACCACCATTT ACGTCAACGG TAAACCGACC CAGCTGACGT TGGCCCAGAT TCCGGCCAAT
CAGATTGAGT CGGTTGAGGT GATCTCGAAT CCATCGGCTC GTTATGATGC ATCTACCTCG
GGCGGCATTG TTAACCTGGT GCTGAAGAAA AACCGGTTGC CCGGTTATAA CGGACTGGTT
AGTGCGGGTA TCGGGAATAA TTCCCGCTTC GATGGTACGC TCAATCTGGA CTGGCGCCGG
GGCAAATGGA ACCTGACCAG CTTTTACTCC ATCAACGCGA CCAAAAATCC GGTGACGGGC
TATGTCTATC GGACGAACCG GAACGCGGAT GGGAGTCCGA TAAACTACTT CAATCAGAAC
ACCAGCATCA GTCTGAACAA TACGTTCCAG AGCGGGCGCA TTGCAGCTGA CTATGCGCTC
AATAAGCACA ATACGTTATC GCTGGCGGCA ACGCTCGTTG GGGGCGAATT CAATACGGTG
AGCAGCCAGC CCTACGAGTA CCGCGACCTG TCGCAGCGCG TGATTAGCTC CGGCAATCGG
AACACCGTGC CACACAATAC CTTTACCAAC CTCGGTTTGG AATTCGACTG GAAACACCAG
TTTGCCCGCA AAGGACAGGA GTTGAGCCTG GTTACCTCGT ACAGCCGAAA CCATCTGTCC
AACGCAGCCG ACTGGTACAC GACGGCCTTG AATGCGGAGT CGGGCACGGG CACGGCGACA
TCTCAGCCGG GTTTCCCCGA ACGGGATAAA ATTACGGGTC GCACCATCGG TGATCAGGTC
ATTGCCCAAC TCGACTACAC GCATCCGCTG GGCGATTCGG CCAAGCTGGA AATGGGATTG
CGCAGTTACA CCTACATCCG CGATCAGCAG TATTTTTTCA ATAAGCTGAA CAACGATACA
CAGGCGTATC AGTTACTACC CAGCTATTCG CAGGACGCCC GGATTGCCGA AGCGGTCAAC
GCCGTTTACG TGCTTTATAC GCGCCAGTTC CGCCGGAATA TCAGTTTGCA GGCGGGTTTG
CGGTTAGAGC AGTCGAGTTT ACACGGCACC TCCCGGCTCG ACACAACGAC GTTTGGCTAT
AACTACCCAT CCGCCAGTGG GCAGAATCTG TTTCAGTCTT TTTTCCCCTC CTTTGCTCTT
TCGAAAAAGC TGAGCGAAAA CTCTGAAATT GGCCTTAGTC TAAGCCGCAA GGTAGGAAGA
CCTAATTTCC GGCATTTGTT CATTGGCATT CAGGCGAATG ACCGGCAAAA TATCACCATC
GGCAACCCCG CCGTGCGGCC GGAGTTTGTC AATACGGCTG AGGTCAACTA CAACAAAAGC
TGGGATAGCC CGTTGCTCGG CGCAGTAAGC TGGCTGGCTA CGGCTTATTA CATCTACGAA
GACCATACCA TCAAACCCTT CACGCGCCCT TCGGCCGCTG ATTCGTCGGT GCTGGTGACA
ACGTTCATCA ACGTCAAAGC CGACATCCGC TACGGATTTG ACAATACATT AAAGTTTAAC
ATTGGCCCGA ACCTGAGCGC GGTGGCGAAC CTGAACGTGT TCAACGTAAT TCTGCAATCG
GTCGACCTGC AAAATCAGTT GGTTTCCTAC AATGCCAAGC TGAATCTGAC GTATCGGTTC
CCGGCTGCTA TCTCGGCGCA ATTGACGGGC ACCAATGATG GCAAAGCACC TTCGTTGCAG
GGCTACCGGC AGGCCGTACG TGGCATCGAT TTTGCGGTTC GGAAAGGGTT CTGGCAAAAC
CGCGCCAGCG TTACGTTCAC GATCAATGAC ATGTTCAATT CCCGCCGGTT TATCAGCATC
TACGATCAAC CTGGTGCCTA CCAGCTGACC ATGAACCGCC GGGAGGTACG GTTTTATAAA
CTGTCAATAC AATTGCCATT AGGTAGCGAT ACCATCAAAC GTAACCAACG TAAAATGGAT
CGTCCAGACG TGGACTTTAG TAACTAG
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| Protein sequence | MKPVLRLLFV HSILFWVGSA VAQQVATGNG NRLMGTVIDA TTRQVLPFAS VAVFTQRQGK
DSLLTGSQTD EKGAFAIANL PAGTLTARIT FVGYQQLEQV IRIAQAQTDL GTLALKPDAS
QLKEVQVTGE KSGIDMTMEK RTFNVAKNLT TIGGTAENVL KNVPSITLDE SGNPSLRNMA
TTIYVNGKPT QLTLAQIPAN QIESVEVISN PSARYDASTS GGIVNLVLKK NRLPGYNGLV
SAGIGNNSRF DGTLNLDWRR GKWNLTSFYS INATKNPVTG YVYRTNRNAD GSPINYFNQN
TSISLNNTFQ SGRIAADYAL NKHNTLSLAA TLVGGEFNTV SSQPYEYRDL SQRVISSGNR
NTVPHNTFTN LGLEFDWKHQ FARKGQELSL VTSYSRNHLS NAADWYTTAL NAESGTGTAT
SQPGFPERDK ITGRTIGDQV IAQLDYTHPL GDSAKLEMGL RSYTYIRDQQ YFFNKLNNDT
QAYQLLPSYS QDARIAEAVN AVYVLYTRQF RRNISLQAGL RLEQSSLHGT SRLDTTTFGY
NYPSASGQNL FQSFFPSFAL SKKLSENSEI GLSLSRKVGR PNFRHLFIGI QANDRQNITI
GNPAVRPEFV NTAEVNYNKS WDSPLLGAVS WLATAYYIYE DHTIKPFTRP SAADSSVLVT
TFINVKADIR YGFDNTLKFN IGPNLSAVAN LNVFNVILQS VDLQNQLVSY NAKLNLTYRF
PAAISAQLTG TNDGKAPSLQ GYRQAVRGID FAVRKGFWQN RASVTFTIND MFNSRRFISI
YDQPGAYQLT MNRREVRFYK LSIQLPLGSD TIKRNQRKMD RPDVDFSN
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