Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Slin_4954 |
Symbol | |
ID | 8728718 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Spirosoma linguale DSM 74 |
Kingdom | Bacteria |
Replicon accession | NC_013730 |
Strand | + |
Start bp | 6038101 |
End bp | 6041649 |
Gene Length | 3549 bp |
Protein Length | 1182 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | |
Product | TonB-dependent receptor plug |
Protein accession | YP_003389731 |
Protein GI | 284039801 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.0461208 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCTGTT CGTTCTTTCT CGGCTGGATA ACGGCCCTTC TGCTTCTGGG ATCGACCCGG ATGGCTCATG GACAAACGGC CGCCGTACTG ACCGGCTCCG TAACGGATGC CACGACGGGA AAACCCATGC CGTTTGCCAA CGTCTACGTA AATGGATCGA CGCGCGGGAC AATCACCGAC GAAAAGGGGG TTTATACGTT GACGGGCGTG CCACTGGGTA CGGTCGAAAT AGCCGCTTCC TTTGTTGGCT ATCAACCCGC CAGGCAAACA ATCCGATTCG ATAATACAAC ACCGCAGAGA GCAAATTTCC AGCTGAAACC GAGTGAACAA ACGCTGGAAG CTGTAACCGT ACGGGGCAAT CCGAAGCAAT GGGAACGACA GTTGCGGCAG TTTAAAAAGC AACTCTTCGG CGAGCCGTTT GGCGGCCAGT GTCTGCTGGT CAACAGCGAA GTGATTAGTT TTAACGAAGC CAAAGATCAT CTGTATGCAA CGGCTAACGA GCCGTTGATT ATTGAGAATC AGGCGCTGGG CTATCGGTTG ATTTACGCGT TGCAGCATTT CGATGCGACT TCATCCGGAA ATGTTTATTC GGCGGGTACG GCCCGTTTCG AAGAACTAAA ACCCCAGAAC GAGCGGCAAG CCAACCAGTT TCGGCGTAAC CGGTTGACCG CCTACAAAGG CTCAATCCGG CACCTGATGG CCAGCCTGGC GGATAATACG TTCAAAGAGG CAGGTTTTCT GGTCTACCAG GAAGATGTTA CGAAGCCGAT TTTCCTCGAA AGTCGGTCCA TTACGCTGGC CGCTGCGGTT AGTGACTACA AGCGTCTGAT TCCAGTTAAG GTGTCTACGC TGATTCAACC CGGTCGATTA GCGACGGAAC GACGGCTGGT TTCGCCCATG AAACTGATTG TGTTCTATAC GAATGCGGTC TCGGGTTTCT CGCCCTATCC CGATGCCCGT TATGCCTACA CGGAAATGAC CTTGCCCCGC AGTCAGCTGC AACTGACCGT CGATGGGATT ATTACGATGC CGGAAGGGAT GGAAGCGAAA GGCTCGATGG GGAACGACCG GCTATCGACC ATGCTGCCCG CCGACTGGAA ACCCGATGGA ACTCAGAAGC AGACGCTTAC GAACGACCCG CTGGCTACCC AGGGCAAACT TACCCTACCC GACGCCCGCC TGGAACGAAT AACGACGGCC TTCAACGAAC GATTCAAATT ACTGGCTCCC AACGTGTTTG TACACATCGA CAAACCGGTT TACGCCACCG GCGATCGGCT CTGGATGAGT ACGTACTTCC TCGACGCAGC CAATCACCAG CGAGCCAGTG GCGAAACGGC CCTGCATGTC GACCTGCTTT CGTCAACCGG CAAGCTTGTG CAGCACCAAT GGGTACGCAT CGTTGACGGA CGGGGCGAGG GTAACTTCCG CCTGTCGGAT ACCCTCCTGA CGGGAACGTA CCGCCTGCGC GCCTATACCG ACGAAGATGA TGCCCAGCGA CGCCCGGCTT TCGAGCGGTC GGTGGCAATC TATAATCTGT TTCGGAACGA GGTATCCATA CGGAGTGATT CGGTTTCTCA GCCAGTAGAT GTACAGATTT TGCCGGAAGG TGGTCGCTGG ATTACGGGAC TACCCACCCG TCTGGGCGTA AAAATCATAC AGCCCAACGG GCATGGCTTG CTCATCGCGG GGCGTATTGT CGACGACCAG GGCGCTGAAG TTGCTCGTTT CAGGACCAAT CCGCAGGGAA TGACCAGCGT ATCGATGGAG CCTAAGCCGC AGCGGACCTA TTACGCCGAC ATTGTGTATA ACAACCAGCC GCAGCGTGTT CCGTTGCCCA AACCCGAAAC GGAAGGGCTG TTGCTTTCGG CCGATGCAAT CAGCGATACA ACCCGTCTGG CGTTGACCAT ACTAAGCACT AACCGGGCGG TTATCGACTC AGTGTATATC CTGATTCAAC AACACGGCCG GGTGGTCGAT CAGCGAAAAC TTCTCCTGCA AAACGGGGTG GCGAAGTTAA GCCTGCCCAT GATGAGCTGG TTACCGGGTC TTACGCAAGT CACCCTGTAC GACGCCACCG CTAAGCCGCA AGCCGAACGC CTGGTTTTCG TGCCCGAATT CGTGGCACCG GTCCGTGTGT TGATGGGCAT AAACAAAACC CGATATCAGC CCCGCGAGCA AGTTAGCCTG AGCGTCAATC TGACCGATAA CGGATTACCG GCACTGGCCG CTTTATCAGC GTCAATTACC GATGCTGACC AGGTGCCGGA TGATACCGCC GAGGCTACGT TACCCGCACA CCTTCTGCTG ACGGGAGAGC TTCGGGGACG TATCGAAAAC CCCAACCAAT ACGTTGCGAA TCACTCGGCA GAAACCCGTC GAGCGCTGGA CGACCTGCTA CTGACGCAGG GCTGGCGACG CGTAACAGGC ACGCCCGAAA CGGAACGACT CGGTGGTGTA TCACTCAGGG GACGTATTGT AAATGCGAAA AATCAACCCA TTTCCGGCGC ACAGCTCATG GTAGCACCAA CGGCCGGACA ATCGTCCATA AAATCGGCTG GGGTTGATGA ACAGGGGCGC TTCCGGCTGG CGGGGCTGGC CATTGCCGAT ACGGTACGGT TACTGACGCA AATCACGGAT CGTCAGTTTA AAAATATCCC AACCAAAGAC GCCATTCTAG TTCTGGAAGG GCCGGGTAAA TTGTGGGAAT ACGCTAAGCT ACCGGTTGCG CCAAACGGGC CGACGTTGCG GTCCCAGTTG GAAGCGGCCC GCATTCGACA GGAAGCAAAC GCCGGTTTTT ACCGTGACAA AACAGCAAAA GTGCTAAAGG AGGTGACCGT TCGAGCACAG AAATTCGATA AAAGACCCGA GGATATTCAA CAGCGTAGTT TACACAATGA GGCTGATGCG GTTCTAGTGG TCGACGAGAA ATCGCCCGCT TACCAGAATC TATACGAAAT GATTCAGGGA CGATTGGCAG GCGTGACAGT TACCCGAGAA GGGGCCGCTG TTGCGCGTAG CTACAAGGTG TTTATACGGG GCGTGAACAG TTTCAAAAGT GGTATACAAC CCTTGTATCT GATGGATGGT ATACCCATAG AGGACCCCGA TGGAACCGCT TTGCTATTTT TCAGTACAAG TGATATTGAA CGGATTGAAT TGCTCAAAAG TGCGATTACA ACGGGTACCT ACGGAGCTCG GGGCGGAAAC GGGGTGATAG CTTTTTACAC CAAAAGCTAT CGATCCATGC AGGGAAGTGA GAAGCTTAAG GAGGGAATGA CGCCGATTCA ATTTATTGGC TACCCGTCGG TGCAGCGCGA GTTCTACGTA CCGCACTACG ATGCGGAGGC AACCACCAGC CCGATTTCCG GCCCCGTCGA TAACCGGGAT GTATTGTATT GGAAACCAAT GATGCAAACC GACAGTCAGG GACGCAGCCA GCTACGTTTT CCGCTGTCGG ACGTCGTTCG GACGGTACGC GTGGTGATAC AGGGTGTTAC GGCCGATGGT CGTCCGGTGC TGGGCGTTCA GCTAATCCGG GTTCAATAA
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Protein sequence | MRCSFFLGWI TALLLLGSTR MAHGQTAAVL TGSVTDATTG KPMPFANVYV NGSTRGTITD EKGVYTLTGV PLGTVEIAAS FVGYQPARQT IRFDNTTPQR ANFQLKPSEQ TLEAVTVRGN PKQWERQLRQ FKKQLFGEPF GGQCLLVNSE VISFNEAKDH LYATANEPLI IENQALGYRL IYALQHFDAT SSGNVYSAGT ARFEELKPQN ERQANQFRRN RLTAYKGSIR HLMASLADNT FKEAGFLVYQ EDVTKPIFLE SRSITLAAAV SDYKRLIPVK VSTLIQPGRL ATERRLVSPM KLIVFYTNAV SGFSPYPDAR YAYTEMTLPR SQLQLTVDGI ITMPEGMEAK GSMGNDRLST MLPADWKPDG TQKQTLTNDP LATQGKLTLP DARLERITTA FNERFKLLAP NVFVHIDKPV YATGDRLWMS TYFLDAANHQ RASGETALHV DLLSSTGKLV QHQWVRIVDG RGEGNFRLSD TLLTGTYRLR AYTDEDDAQR RPAFERSVAI YNLFRNEVSI RSDSVSQPVD VQILPEGGRW ITGLPTRLGV KIIQPNGHGL LIAGRIVDDQ GAEVARFRTN PQGMTSVSME PKPQRTYYAD IVYNNQPQRV PLPKPETEGL LLSADAISDT TRLALTILST NRAVIDSVYI LIQQHGRVVD QRKLLLQNGV AKLSLPMMSW LPGLTQVTLY DATAKPQAER LVFVPEFVAP VRVLMGINKT RYQPREQVSL SVNLTDNGLP ALAALSASIT DADQVPDDTA EATLPAHLLL TGELRGRIEN PNQYVANHSA ETRRALDDLL LTQGWRRVTG TPETERLGGV SLRGRIVNAK NQPISGAQLM VAPTAGQSSI KSAGVDEQGR FRLAGLAIAD TVRLLTQITD RQFKNIPTKD AILVLEGPGK LWEYAKLPVA PNGPTLRSQL EAARIRQEAN AGFYRDKTAK VLKEVTVRAQ KFDKRPEDIQ QRSLHNEADA VLVVDEKSPA YQNLYEMIQG RLAGVTVTRE GAAVARSYKV FIRGVNSFKS GIQPLYLMDG IPIEDPDGTA LLFFSTSDIE RIELLKSAIT TGTYGARGGN GVIAFYTKSY RSMQGSEKLK EGMTPIQFIG YPSVQREFYV PHYDAEATTS PISGPVDNRD VLYWKPMMQT DSQGRSQLRF PLSDVVRTVR VVIQGVTADG RPVLGVQLIR VQ
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