Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Slin_3208 |
Symbol | |
ID | 8726961 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Spirosoma linguale DSM 74 |
Kingdom | Bacteria |
Replicon accession | NC_013730 |
Strand | - |
Start bp | 3886290 |
End bp | 3888761 |
Gene Length | 2472 bp |
Protein Length | 823 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | |
Product | TonB-dependent receptor plug |
Protein accession | YP_003388018 |
Protein GI | 284038088 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00709825 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.206035 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCTCAA CTACTTTTAG GTTAACTGGG TTGTTTTTGC TTCCTGTAGT AACATTACTC GTTGCGTTCC GAACGTATAA TGACGAGTTT ATTAAACGTT TACTCGACCA GTTTCGTCTT TATAACCAGC AGCGGCCTAC CGAGAAAGTA TACATTCATA CTGATCGGGA AGCGTACCTT ACCGGCGAAA CGATCTGGCT GAAAGGCTAT CTCGTCAACG GAAGTTCGCA CGAAGCCGAT ACACTCAGCC GGGTGCTGTA TGTCGATCTG GTAGACCCCA TGGCCAGACG TGTTCGTTTA CGGACCCAGC TCCGGGCCAC AAACAGCTAT GCGCCTGGCC AGCTGACGTT GCCTGATTCC TTAGCGGCCG GAAGCTATCA ACTCCGCGCC TACACCAGTT TCATGCGGAA TTACCCGGAG GCTTACTTTT TCACCAAGAC GCTAACGATT CTTCGTCCCG ACACGGGTGC CGAAAAGAAT ACGGGTGCTC AAGCCAGCAA TCGTCCTGAT ATACAGTTTC TCCCCGAAGG CGGGCAGTTA CTTATGGGTT TGGGAGGCCG GGTGGCGTTT AAAGCCGTCA ATTCGTCGGG GATGGGGGTA GACGTAAAAG GCTTTGTGCT GGATACCCGC AAGGATACCG TTACCGGCTT TTCCAGTTCG CACCTGGGTA TGGGCTTCTT TATACTTAAA CCCGAACCCG CTCAGACCTA CACGGCTTAT GTGCCACTTC CTGATGGAAC GTTAGCTGCT TATCCACTCC CTGCGGTTCA GCAGGAGGGT GTAGGTATGC AGGTCGAAAA TCTGACGAAT AAAGACAATG TGCTGGTGTA TGTCATGCAC AATAAAACCG GCATTGATAC GACTGCCCGA ATAACGCTGG TGGCGCAGAC AAGAGGGCAG ATTTATCAGA CGGCCCGGAT TCCATTTGTC AAAAAGCTGG CTATGGTACG CCTGCCGCGT GCTCAGTTTC CAGAAGGTAT TACCCAACTG ACGGTCTTTG ACGAAACCAA TAAGCCCGTT TGTGAGCGAC TGATATTTAT TCATCGGGCC GAACAGATCA ACGTCTCTCT GGTGGCGGAT AAACCAGCCT ATCGGAATCG TGAGCAGGTT AATCTGACCG TGACGACGAC CGACGCAAAC GGCAAACCAC AAGCTGCTAA TCTGTCGTTG GCTGTTGTCG ATGCGCAACT CGCGCCCGAA GTAGACGCTA ACGGGTCCAC CATCCGGTCA CATCTGCTGC TGGCGTCTGA TATAGCTGGT ACGATCGAAC AACCCGATTA TTATTTCAAA TCTGCCAATC CGGACCGGTG GCTGAAGCTG GATATACTGA TGATGACCCA GGGCTGGCGA CGATTTGCCT GGGTCGATGT GCTGTCGGGA ACCATACCAC CAAACAAATA TCCACTGGAA GGGGGCTTGT CGCTAACAGG ACGGGTTATC CGGCCTAATC AGAAAGATAT TGGCGGAAAA GTTAAGCTTA CGTTTATGCT GGCTAAACGG GACAGTACAC GTGATATCCT GATTGGTGAT ACCGATGAAG CCGGCAATTA TGCCGCTTAT GACCTTGATT TCACGGATAC CACAACCGTC ATGATCCAGG GCCTGAAAGG GAGTGCAAAC CGAAATCTGG TTATCACCCT CGATCAGCTT CTTGTCCCAC CGGTAACCAT CCTCAAAGTA CCGTACAACC CACTCGAATT TAGGCGTGAT GAACTGGCCG ACTTTATCCG GCGAACCAAA GAATATCAGG AAATTGAGCG GCAGATCCGG CGCAACGGCG AAGTATTGTT AAATGCGGTG ACTGTAAAAG CGAAAAAGTA TAAGGAGCAG GATTCGAGAG TTATTTATGG TACGCCGGAT GCCAGTGTCA AATTCGATCA AGTCAATACC TCCGGGCGGT TAACGTTTCT GGATGTTATT CAGGGGCAAA TTGCGGGTGT GCAGGTAACC GGCAACGGGT TGAGCGCCCG GGTGCAAATT CGGGGTGCCG CCAATTTTAA TGGGCCGGTT GAACCGTTGT TCGTACTTGA CGGTATGCCG ATGGACTTGC AGGGGGTTAT GGGCGTATCG GTGCAGGACA TTGACCGGGT GGATGTCCTG AAAGGCGCTT CGGCGGCTAT CTATGGATCG CGGGCTGGAG GTGGCGTTAT TTCAATCCTC ACCAAACGAG GTAAGCCGGA TTATGATTTC TCGAAAGATG TAACGCCGGG GATGCTCATT GCCAAACTAC CCGGCTATGC ACCCCGGAGA GAGTTTTACG CTCCCCGTTA TGACGTTAAA AAGCCTGAGC ATGCTCGCCC GGATTATCGA ACAACGCTGT TCTGGACACC CATGATCCAG ACTGATCAAG ACGGGAAAGC CACCGTTTCA TTCTTTACAT CTGATGCTAA AACCAATCTT CGGATTCGGG CAGAAGGCCT TACCCGATCA GGAATGCCGG GCGTAGGCGA TGCGCGAGTA CGGGTCGAGT AA
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Protein sequence | MRSTTFRLTG LFLLPVVTLL VAFRTYNDEF IKRLLDQFRL YNQQRPTEKV YIHTDREAYL TGETIWLKGY LVNGSSHEAD TLSRVLYVDL VDPMARRVRL RTQLRATNSY APGQLTLPDS LAAGSYQLRA YTSFMRNYPE AYFFTKTLTI LRPDTGAEKN TGAQASNRPD IQFLPEGGQL LMGLGGRVAF KAVNSSGMGV DVKGFVLDTR KDTVTGFSSS HLGMGFFILK PEPAQTYTAY VPLPDGTLAA YPLPAVQQEG VGMQVENLTN KDNVLVYVMH NKTGIDTTAR ITLVAQTRGQ IYQTARIPFV KKLAMVRLPR AQFPEGITQL TVFDETNKPV CERLIFIHRA EQINVSLVAD KPAYRNREQV NLTVTTTDAN GKPQAANLSL AVVDAQLAPE VDANGSTIRS HLLLASDIAG TIEQPDYYFK SANPDRWLKL DILMMTQGWR RFAWVDVLSG TIPPNKYPLE GGLSLTGRVI RPNQKDIGGK VKLTFMLAKR DSTRDILIGD TDEAGNYAAY DLDFTDTTTV MIQGLKGSAN RNLVITLDQL LVPPVTILKV PYNPLEFRRD ELADFIRRTK EYQEIERQIR RNGEVLLNAV TVKAKKYKEQ DSRVIYGTPD ASVKFDQVNT SGRLTFLDVI QGQIAGVQVT GNGLSARVQI RGAANFNGPV EPLFVLDGMP MDLQGVMGVS VQDIDRVDVL KGASAAIYGS RAGGGVISIL TKRGKPDYDF SKDVTPGMLI AKLPGYAPRR EFYAPRYDVK KPEHARPDYR TTLFWTPMIQ TDQDGKATVS FFTSDAKTNL RIRAEGLTRS GMPGVGDARV RVE
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