| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_1257 |
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| Symbol | |
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| ID | 8724990 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Spirosoma linguale DSM 74 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013730 |
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| Strand | + |
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| Start bp | 1536930 |
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| End bp | 1540973 |
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| Gene Length | 4044 bp |
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| Protein Length | 1347 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | |
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| Product | glycoside hydrolase family 2 sugar binding protein |
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| Protein accession | YP_003386106 |
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| Protein GI | 284036176 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.618189 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCATTA TCACGCCAAC CGGCATTCTG GACATTCGTA AAAAACAGCC TGCACAGCCA
GCGGCCGTTG CCGAATCATT TGCCGATGCG TTCCTTAATC CGCCAGCCTC GGCACGGGCG
CAGTGCTGGT GGCACTGGAT GAACGGCAAC GTCACCGCCG ACGGGATCAC CCGCGATCTC
GAAGCCATGA AGCAGATCGG GCTGGGTGGG TTCCAGAACT TCGACGCCGG CACGGGTATT
CCCAAAGGTC CCGTGGTGTA TCTGAGTCCC GAATGGCTGG CGCTGAAAGA GCATACCATT
AAGGAAGCGG AACGGCTCGG GCTGGAGTTT ACCATGCATA ACTGCCCCGG CTGGTCGTCG
AGTGGCGGGC CGTGGATTAC GCCCGAACTC GCTATGCAGC AGGTGACCTG GAGCGAAACG
GTTATAACGG GTGGACAGGC CGTAAGCATC CCACTGGCTC AACCGCTCAC CAACCTGAAT
TATTACCGGG ATGTGGCGGT CATCGCGTAT CCGTCGCTCC CCGGCGAAGT GTCGCTCCCG
ACCGTTGTTC AGCAGATTAG CGCGAATGGG GGCGGGGTGG TTTCTGCCGA TGAACTGGCT
GGAAGCAAAG GTGTGTCGAT AGTTGGGGAT GCCGACGATA AACCTGTTAC ACTACTTATT
GAATTCAAAC AGCCCTACGA AGCGCATTCC CTTGCGTTTT TGAGCAAACC CCTGGGTAAA
CCCCGGCCAT CGGGTGGTTT TGGGGGCGGT CCGCAACTAA CGCTTGAGGT GTCGGACGAT
GGACAGCAGT TTCGTAAACT AACGTCGATT GGCACCGGCC GGTCGTCGGA ACTGTCGCTG
AGTCTGGCGG AGTTCCCGGC TGCGAAAGCA AAGTTTTTTC GGATCACATC GCCCGGCGCA
CGTCAGTTTG CCCAGCTTCG GTTTTCGGGA GCCGCGCGGC TGGCCGACTG GCGAAAGAAA
GCCAACAGTG CCTTTGGCGT GATGGGCGTT ACGCCCGACC AGGACGGCAG CAGCAAAGCC
GCGATCAAGC TGGATTCACT TGTTGACCTG ACCCGGTTCG TGAAAGACGG GATACTAACC
TGGACGGCCC CTGCAGGCAA CTGGACGGTA CTACGGATGG GTTACACGCC TAACGGCGAG
ATGAACCGGT CGGCCCCCGA TACGGGTGTG GGGCTGGAAT GTGATAAATA CAGTGCAGTC
GCCATTGATT TCCATTTCAA CAAAATGATG GAAAACCTGC TGCCAACGCT CGGCCCAATG
GCGAAAAAAG GCCGCGTCGG GATGCTCATC GACAGTTACG AAGTGGGTAT GCAGAACTGG
ACGGCACAGT TTCCGCAGGC GTTTCAGGCC CGCTCGGGTT ATTCGCTCCT CAACTATCTT
CCGGCATTTA CCGGGCGCAT CGTGGGCGAT GTCGACACCA CCGAGCGGTT CCTGTGGGAT
GTACGCCGAA CCCAGGCCGA CCTCATCGCT GATAATTATT ATGGCCGATT CCGCGAGTTG
TGCCATAAAA ATGGCATTAC GGCCTATACC GAGCCTTACG ACCGGGGGCC AATGGAAGAA
ATGCAGATCG GTGCCCGCGT CGACGTGAAC ATGGGTGAAT TTTGGAATGG TCTTTCGGCC
ATCTTTCAGA ACAACCTGAC CATGCGCCGG ACTACCAAAC TGGCGGCTTC CATCGCCCAT
ATTAACGGGC ATGCCGTTGG GGGAGGCACG CCAGATAATC CGCAAGTGGT GGGAGCGGAA
GCCTTCACTG GCGAACCCGA ATCGGCGCGC TGGCAGGAGT ATCCTTTTGC CATGAAAGCC
CTGGGCGACA AGATGTTTAC GCAGGGACTG AACAAGATTA TCTTTCACCG GTACGCGCAC
CAGCCCCACC CAACCGCCGT GCCGGGCATG ACGATGGGGC CGTGGGGCAT TCACTTCGAC
CGGACAACGA CCTGGTGGAA TCAGGGACGG TCGTGGCTGG ATTACATTGC CCGTTGCCAG
AGCCTATTAC AGCAGGGGCT GTTCGTGGCC GATCTGGCGT ATTTCACCGG CGAAGACGGC
AATCAGTACA CGAAAGTAGA ACCCCACGAG TTAACCCCAA CCCCGCCGGA GGGTTACGAT
TACGACCTTA TCAATGCCGA AACGATCATC AAACGAGCCA GCGTATCCAA CGGAAACCTG
GCCCTGCCCG ACGGCATGAG CTACCGGGTG CTGGTGCTTC AGGATCATAA GGCGTTAAGT
ATTGAGCTGG TTCGGAAACT ACGGGAGCTG GTCAATGGCG GACTTATTCT GGTCGGCTCC
AAACCTGCAA CGTCGCTGGG GTTACGGGCG AAAACGCAGG GGAATGATGA ATTTCAACGA
CTGGTGGCCG AGATTTGGGG GGCTGATAAC GTTACCGAAA ATCGGTTGGG GAAAGGACGC
GTTTTTCGGA CGCAGCCAAT GCAAACGGTG CTGTCGGCTC TCGCCATAAA ACCTGATTTC
GAGGTTACGT CCCGCTCCGG CGATGCGCCC GTTACGTACA TTCACCGGCG CATCGGCAAG
ACGCAGGTGT ACTTTCTGGC CAATCAGCGA CGAACCCCCG AAGAACTGGT TTGCACCTTC
CGCGTCGACG GTATGCAGCC CGAACTCTGG GATGCCGCAA CGGGTAAACA GACACCATTG
ACGCTCTATT CCGCTGCAAA TGGGCAAACG CAGGTGCCCG TTCAGCTCGA TCCGGCGGGT
TCGGCCTTTA TCGTGTTCCG CGCAGCAGCC AAACCAAAAC AACTGCAATC GGTCAGCAAC
GGAAGCGGGG TTGTTCTGAC GAATAAACCC TTTTCAGCCC CCGCCCGAAA ATTATACAAA
GACGTTTCGA ACAACTTTAC TATCAGTCTG TGGGCCAAGC CAGAGTTGAA CATTATGCTG
TCGACGAGTG GCTTTCTGGA CACGGTAAAA AACTCCTGGA CAGATTTTTA CGCCCTGTAT
CCGCCCGCCG GAACGGACTT GTACGGGGAA GGGCACGCAG CCTGCGGATT GGCCATCGGG
CGGAATGGCG TGGCTGTCTG GGAGCGTACG ACCGGCAACC CTGTCTTTAA ACTGGCGGCC
CCAACGGAAC TATCCGGCTG GTCACACATT GCCCTTGTGT ATTCTGATGG TATCCCGGCG
GTGTATGTCA ACGGCAAACT GATTCAGCGG GGAAAAGCCG CCGGAAGCAT CGTTCACCCC
GGTCTGGGAC AAGCCTATCT GAGCGATGGT GCGTCATTCT ACAACGGCGA CCTGAGCGAA
CCGCAGTTGG TAGCAGGGGC CATAACCGAA GACCGGATTC GTCAACTGGC CACCGAGCCT
CGCCCGAAAC CGGTAGATAT GCCCGCTGTG CAGCTGGCTA CGAATGGTAT ACCGGGCCTG
CGTTTCTGGC AGAACGGCCG GTATACGCTG CAATACAGCG ATGGTCGAAA AATGCCGGTA
ACGGTTTCCG GTATCGCTCA GCCGATGGAA TTAACGGGGC CGTGGCAGGT CAGCTTCCCC
CCCAATCTGG GTGCCCCGGC ACAGATTACT CTTCCCAAAC TAATGTCGCT CAGCAGCCAT
GAACAGGACG GGGTGAAGTA CTTTTCGGGG ATAGCCAGTT ACAGCAAATC GTTCACAGTA
GCGCCCGGTT CGCTCGGAAA AGGCAAAAAA CTCATGCTGG ATCTGGGTCG AGTGGAAGTG
CTGGCGGGTG TTCGGGTCAA CGGCACCGAG CTGGGCGTGT TCTGGAAGCG TCCGTTTTTG
GTCGATATTA CCGACGCCGT AAAGCCCGGT GTTAATACGT TGGAAATTGC TGTAACCAAC
CTCTGGCCCA ACCGCCTGAT TGGGGACGAG CAATTGCCTG ACCCCGATAA ATTTACCCCC
GGCGGTGGGG CCAATGGCAT TGCCAGTCTG AACAATGGAG CGATCGTGGA GCTACCCGCC
TGGTACAAAG AAGGCAAACC CAAACCCGCC GACGGCCGGG TAACGTTCAC CACCTGGAAG
CACTACAAAA AAGATTCACC CCTACTGGAT TCGGGCCTCA TTGGTCCGGT AATGTTGAAA
GTAGCCGAAG ATGTAGCGAT ATAA
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| Protein sequence | MAIITPTGIL DIRKKQPAQP AAVAESFADA FLNPPASARA QCWWHWMNGN VTADGITRDL
EAMKQIGLGG FQNFDAGTGI PKGPVVYLSP EWLALKEHTI KEAERLGLEF TMHNCPGWSS
SGGPWITPEL AMQQVTWSET VITGGQAVSI PLAQPLTNLN YYRDVAVIAY PSLPGEVSLP
TVVQQISANG GGVVSADELA GSKGVSIVGD ADDKPVTLLI EFKQPYEAHS LAFLSKPLGK
PRPSGGFGGG PQLTLEVSDD GQQFRKLTSI GTGRSSELSL SLAEFPAAKA KFFRITSPGA
RQFAQLRFSG AARLADWRKK ANSAFGVMGV TPDQDGSSKA AIKLDSLVDL TRFVKDGILT
WTAPAGNWTV LRMGYTPNGE MNRSAPDTGV GLECDKYSAV AIDFHFNKMM ENLLPTLGPM
AKKGRVGMLI DSYEVGMQNW TAQFPQAFQA RSGYSLLNYL PAFTGRIVGD VDTTERFLWD
VRRTQADLIA DNYYGRFREL CHKNGITAYT EPYDRGPMEE MQIGARVDVN MGEFWNGLSA
IFQNNLTMRR TTKLAASIAH INGHAVGGGT PDNPQVVGAE AFTGEPESAR WQEYPFAMKA
LGDKMFTQGL NKIIFHRYAH QPHPTAVPGM TMGPWGIHFD RTTTWWNQGR SWLDYIARCQ
SLLQQGLFVA DLAYFTGEDG NQYTKVEPHE LTPTPPEGYD YDLINAETII KRASVSNGNL
ALPDGMSYRV LVLQDHKALS IELVRKLREL VNGGLILVGS KPATSLGLRA KTQGNDEFQR
LVAEIWGADN VTENRLGKGR VFRTQPMQTV LSALAIKPDF EVTSRSGDAP VTYIHRRIGK
TQVYFLANQR RTPEELVCTF RVDGMQPELW DAATGKQTPL TLYSAANGQT QVPVQLDPAG
SAFIVFRAAA KPKQLQSVSN GSGVVLTNKP FSAPARKLYK DVSNNFTISL WAKPELNIML
STSGFLDTVK NSWTDFYALY PPAGTDLYGE GHAACGLAIG RNGVAVWERT TGNPVFKLAA
PTELSGWSHI ALVYSDGIPA VYVNGKLIQR GKAAGSIVHP GLGQAYLSDG ASFYNGDLSE
PQLVAGAITE DRIRQLATEP RPKPVDMPAV QLATNGIPGL RFWQNGRYTL QYSDGRKMPV
TVSGIAQPME LTGPWQVSFP PNLGAPAQIT LPKLMSLSSH EQDGVKYFSG IASYSKSFTV
APGSLGKGKK LMLDLGRVEV LAGVRVNGTE LGVFWKRPFL VDITDAVKPG VNTLEIAVTN
LWPNRLIGDE QLPDPDKFTP GGGANGIASL NNGAIVELPA WYKEGKPKPA DGRVTFTTWK
HYKKDSPLLD SGLIGPVMLK VAEDVAI
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