Gene Slin_0106 details

Gene Information

• Locus tag: Slin_0106
• ID: 8723834
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Spirosoma linguale DSM 74
• Kingdom: Bacteria
• Replicon accession: NC_013730
• Strand: +
• Start bp: 125617
• End bp: 129102
• Gene Length: 3486 bp
• Protein Length: 1161 aa
• Translation table: 11
• GC content: 57%
• Product: TonB-dependent receptor plug
• Protein accession: YP_003384977
• Protein GI: 284035047

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 29
• Fosmid unclonability p-value: 0.813272
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAAGAAAT CGTTACCGCT CCTCCTGACA ACCGGCTGGT TGATTAGCGT GGGCTATGGG 
CATACCGTCG CTCAAACGCT GGCATTTGCC CGCCCTCCGC AGCATACCGA TAACAAACAA 
CCCGGCAAAG GCACGGTTGG CATCGGGGCC AGTCAGCCGC TTAAGCAAAC GCTATTGCAG 
CTAAAAGAGC ATTATGGAGT CGATATTCTG TTCGAAGAAT CGGTCATCTC GCGGCACCTG 
AGCCCGCTCG AACCGCTCAA CTTCAGTGCC CGGCTCGAAA CAAACCTCGA TTTGCTTCTT 
AAACCGTATG GACTGCGGTT CAAGAAGCTG CGGTCGGGGG CGTACCTGAT TCTGCCCCCT 
AAAAACGGCA ATCGCGCAAT TATCAACCTG CCTGCGCCAA TTCCCATGAC GACCGCCGGA 
ACAGGTCCTG TTTCACTGGC CGGTCTTGCA AACCTGGCAA CGGTACAGCC GATGGAAACA 
CCGCAGACCG ATGTACGGAT AACCGGCCGC GTAACGGGCG AAACGGGAGA GGATCTGCCG 
GGCGTAAGTG TCGTGGTGAA AGGGTCGTCG CGCGGTACAA CGACCGATGC CCAGGGGCGT 
TATCAACTGA GCATCCCAAC GGATGCGTCG GCCGTTACGC TGGTGTTCAG CTTTGTCGGC 
TACGTCAGCC AGGAGCGGGC TGTTCGGAAC CAGACAATTA TTAATGTGCA GTTACTGCCT 
GATACAAAAT CACTCAACGA AGTGGTAGTC GTGGGCTACG GGCAAGTGAA GAAAAGCGAC 
CTGACGGGCG CCGTATCGAC CGTACCCGTC GACGAAATTC GGAAGGTGGC CGTTACGTCT 
TTAGATCAGG CCTTGCAGGG GCGGGCCGCC GGGGTGCAGA TCACCCAGAA CTCGGGCGCA 
CCGGGTGGCA CGACAAGTAT CCGCATTCGG GGTGGCAACT CCATCCAGGG CGATAACGAG 
CCGCTGTACG TCATCGACGG CATTCCATTC AAGAACGACG GGGCCAGCAG CGGGTCTAGT 
TTCAACGTGC TGAGTACGCT CAACCCCAGC GACATCGAGT CAATTTCAGT CCTGAAAGAT 
GCCTCGTCGA CGGCCATTTA CGGATCGCGC GGCTCGAATG GCGTGGTGAT CATCACCACC 
AAACGGGGGA AGGCTGGTAA ATCGACCATC AACCTGGATA CCTATTACGG CATCCAGACG 
GTTCGCCGGA AGTACCCCGT GCTCAATGGA CGCGAGTACG CCCAGTTGGT GAACGATGCC 
AACACCAACG AAGGTCGTCC GGCGGTGTAC ACCCAGGATC AGGTCAACGC TTTTGGCGAA 
GGAACCGACT GGCAGGATGA GATTTTCCGG CAGGCACCCA TTGCCAACTA CCAACTGTCG 
ATGAGCGGTG GCGACGAGAA AACGCAGTAT GCCATTGCTG GTGGGTATTT CAAACAGGGC 
GGCATCATCG TCAATTCCGA TTTTGACCGG TATTCGTTCC GTATCAATCT GGACCGCAAG 
CTGACCAACA AAATAAAGAT CGGCAATAGC CTGACGGTCA ACCGGACGGT GACTAATCAG 
GCGCGTTCGG ATGGGGACTT GGGTAGCGCG GGGTTGGTGA CCATCGCGGC CCTGCAATTT 
CCGTCCATTC TGCCCGTCAC CAATCCCGAT GGCTCGTACC TGCTGACCAG CCCGGCGCTG 
GCTTTCACCG CCGATAACCC CGTGGCACTG GCCCGCGACA ACAAAAACCG GACTACCGCC 
TACCGAATCT TCGGCAATGT ATTCGGCGAC TACCAGATTA TCGACGGACT CAGTCTGCGG 
GTGCTGCTGG GTATCGACGG AGTGTTGCAG AAGCAGGATT CGTATCTGCC CCGCTCGGTA 
TCCAGCGGGC TGGCGCAGGG GGGAGCCGCT TCGATCTTCA ACGGGCAGTC GGTAACCTGG 
CTGAACGAAA ACTTGCTGAC CTACACCCGT ACGTTCAACA CGGTGCATAA TGTAACGGCC 
CTGCTCGGCT ATACCCAGCA GGCAAACCGC ACGGAAAATA GCCAGGCGCA GGCTCGTAAC 
TTCGTAAACG ATAACCTGGG GTCGAGCAAC CTGGGTTCCG GTTCGGTGCC GCTCACGCCC 
TCGTCGGGCA TTGGCACCTG GGGGCTACAG TCCTATCTGG CCCGGATCAA CTATGGCTAT 
AAAGACAAAT ACCTGCTCAC GGCTTCGTTC CGGAGCGATG GTTCGTCGCG CTTCGGGGCT 
AATAAGCAGT ACGGCTATTT CCCGTCGGCG GCTTTGGCCT GGCGGGTGTC GGAAGAAGCG 
TTCCTGAAGA ATAATCCGGT AATCAACGAT CTCAAATTTC GGGTCACGTA TGGCGCAACG 
GGTAACCAGG ATGGGGTGGG CAACTACCCG GCCTACTCGC TGCTGGGTAC CCAAAACTAC 
GTGTTCGGCA ACACCGTGTC GACGGGCTTG GGTCCCAATC AGATTGCCAA CCCCGACCTG 
TCGTGGGAAA CGACGACCCA GGCTGACATG GGTGTAGACG TTGGTCTGCT TAACAACCGC 
ATCACCTTAA CGGCCGATCT GTACCTGAAA CGCACCAAAG ACCTGCTGCT CAACGTAACT 
GTACCCAGCA CATCCGGCTT TTCCAGTGCC TTCAAAAACC TTGGCAAAGT GGAGAACAAA 
GGGTTTGAAC TCAGCATCTC CTCACGAAAT ATTGACGGCG CCTTCAAGTG GAACACCGAC 
CTGAACTTTG CTCTCAACCG GAACAAAGTG CTCGACATTG GCGGGGCTCC GCAGATTTTT 
GCCGGTAGTG TAGCCAACAT TGGTCAGGGG CTGAATTCGG GGATTATCCG GGTAGGGGAG 
CCGCTGGGGT CATTCTTCGG CTATGTTACG AACGGCCTTT ACCAAACCAC CGATGAATTG 
GCCGCCCTCA CCGACCCGCA GGCCCGTAAA CCCGGCGACC GCAAGTACCT CGACCTCAAC 
GGCGATAAGA AAATTGACGA CAACGACCGC ACCATTATCG GTCGGGCACA ACCCAAGTTC 
CTGGGTGGAC TCAGCAACAC CTTTTCCTAC AAAGGCATTG AGCTGACGGC TTTTCTACAA 
GGTGTTTATG GGAATAACAT CCTGAATGCC AATCGGTATG AACTCGAATA CCTTAACGCC 
ACCACCAATC AGGACCGCGA TATGCTGAAC CGCTGGACAC CCACCAACAC CAATACCGAC 
ATACCGAGGG CTTCAACCAC TCGTCCGGCC AACCGCGTGT CGACCCGGCA GATCGAGGAT 
GGGTCTTACC TCCGGCTGAA GAACGTTCAA CTGGCCTACA ACCTCCCCGC ATCGGTGCTT 
AAAACGCTGA AGATTCAGTC GCTGCGGGTG TACGTGACGG CGCAGAACTA CCTGACCTGG 
ACCAGCTACT CGGGCTACGA CCCGGAGGTA AACCGGTTCG GGCAGGACAG CCGTAGCCAG 
GGCTTCGATT ATGCCAGCTA CCCATCGGCC AAAACCATCC TGTTCGGCCT TAACGTAGGG 
TTCTAA 

 

Protein sequence

MKKSLPLLLT TGWLISVGYG HTVAQTLAFA RPPQHTDNKQ PGKGTVGIGA SQPLKQTLLQ 
LKEHYGVDIL FEESVISRHL SPLEPLNFSA RLETNLDLLL KPYGLRFKKL RSGAYLILPP 
KNGNRAIINL PAPIPMTTAG TGPVSLAGLA NLATVQPMET PQTDVRITGR VTGETGEDLP 
GVSVVVKGSS RGTTTDAQGR YQLSIPTDAS AVTLVFSFVG YVSQERAVRN QTIINVQLLP 
DTKSLNEVVV VGYGQVKKSD LTGAVSTVPV DEIRKVAVTS LDQALQGRAA GVQITQNSGA 
PGGTTSIRIR GGNSIQGDNE PLYVIDGIPF KNDGASSGSS FNVLSTLNPS DIESISVLKD 
ASSTAIYGSR GSNGVVIITT KRGKAGKSTI NLDTYYGIQT VRRKYPVLNG REYAQLVNDA 
NTNEGRPAVY TQDQVNAFGE GTDWQDEIFR QAPIANYQLS MSGGDEKTQY AIAGGYFKQG 
GIIVNSDFDR YSFRINLDRK LTNKIKIGNS LTVNRTVTNQ ARSDGDLGSA GLVTIAALQF 
PSILPVTNPD GSYLLTSPAL AFTADNPVAL ARDNKNRTTA YRIFGNVFGD YQIIDGLSLR 
VLLGIDGVLQ KQDSYLPRSV SSGLAQGGAA SIFNGQSVTW LNENLLTYTR TFNTVHNVTA 
LLGYTQQANR TENSQAQARN FVNDNLGSSN LGSGSVPLTP SSGIGTWGLQ SYLARINYGY 
KDKYLLTASF RSDGSSRFGA NKQYGYFPSA ALAWRVSEEA FLKNNPVIND LKFRVTYGAT 
GNQDGVGNYP AYSLLGTQNY VFGNTVSTGL GPNQIANPDL SWETTTQADM GVDVGLLNNR 
ITLTADLYLK RTKDLLLNVT VPSTSGFSSA FKNLGKVENK GFELSISSRN IDGAFKWNTD 
LNFALNRNKV LDIGGAPQIF AGSVANIGQG LNSGIIRVGE PLGSFFGYVT NGLYQTTDEL 
AALTDPQARK PGDRKYLDLN GDKKIDDNDR TIIGRAQPKF LGGLSNTFSY KGIELTAFLQ 
GVYGNNILNA NRYELEYLNA TTNQDRDMLN RWTPTNTNTD IPRASTTRPA NRVSTRQIED 
GSYLRLKNVQ LAYNLPASVL KTLKIQSLRV YVTAQNYLTW TSYSGYDPEV NRFGQDSRSQ 
GFDYASYPSA KTILFGLNVG F