| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sked_35220 |
|---|
| Symbol | |
|---|
| ID | 8635155 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sanguibacter keddieii DSM 10542 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013521 |
|---|
| Strand | - |
|---|
| Start bp | 3931655 |
|---|
| End bp | 3933970 |
|---|
| Gene Length | 2316 bp |
|---|
| Protein Length | 771 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | |
|---|
| Product | PAS domain S-box |
|---|
| Protein accession | YP_003316244 |
|---|
| Protein GI | 269796789 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGAGTCCG CGAGACCGCG TCGCGGCGTG TCAGGTGACG CGCCGGACCT CGGAGACCAC
CGTCCCGTGA CGCACGACGA GGCACCGGGC CTCCCGCTGC CTGTCCTCGG CCGCGCCCTC
CAGGGTGCCG GGGTCGCAGC GGTCCTGCTC GACCCGACCG CACCGGTCCC GACGATCCTC
TGGGCCAACG ACTCCTTCGG GCGCCTGACC GGTCACCTCC CGGACGACGT GGTGGGCCTT
CCCGTCACCG TGCTGGAGTC CGACGAGGGC AGTGCCCTCG ACCTCGACGC GGTCCGGGCG
GCGATGGGCC CCTCGTCCGA CGGGACGCCT GTCACCTGGC GGATGCTCAA CCGGCGCGCC
GACGGCGCGC ACCTCTGGTG CGAGTACGCG CTCTCGCAGG TCCGTGGCGG CGACGGGCAG
GTCGAGGCGT GGCTCGCGCT GCTGAGCGAC GTCTCCGGGC AGGTGCGCGA CGCGGCCGGG
CGTGCCGGTG CCGTGCGTCG TGCCGAGACG GCCGAGTCGG TCGTCTCGAT GGTCAGCGGC
GTCTCGCGGC TGCTCAACGA CATGGAGTAC CCCTTCGTCC TGCGCGACAT CTGCGCCGCC
TACGGTCGCG GCGTGGTGGC CTGGGGCGGG TTCTTCCTGG ACGACGGCGG GCTGGGCTAC
TCCGACGGGG TGCCACCGGT CGCGCTGTCC CGACCGCGCC GGTCGCCGGT CTCGACCGAC
GCCCTCGGCG ACGCCCGGGT GGTCGGGGAG TCGGCTGGGA CCCCGACCGA CGTGACCACC
TTCATCGACC CGCTCCGCGA GCTGGTCGAC GGTTACGTCA CCGGTCCCGT CGACTTCCCG
CTCGCGACCA CCTACCCCGC GGGGAGCGAC GCCGCGACGG TGTCCGCGGA GGTCCGTGAG
CGCGCCGGCC TGCTCGACGC GCCGGGCGAC GGTCCCGGGG TCCCGGTGGC CCAGGTGGTG
GTCGTCCCCG GGCGGCGCGC CGTGCACGGC GTCTTCGTGT CGCTGCGCAC GGTGGACGGG
GTCGACGACG AGACCTCGGC CCGGCTTGTC ACGGCGCTCG TCGACCGGGT TGCCGTCGGG
GTCGACACGC TGCGTCTGCA CGCCCGGGAG CACACGCTCG CCGAGACGCT CCAGCGGTCG
ATGCTCCCCG AGCAGGTCGA GGTGGCCGGC CTCGACGTGT GGACGTACTA CGCACCGACC
TCCGACGACG CGCAGATCGG CGGCGACTGG TACGACATCC TGCAGATCGA CGAGGAGATC
GCGGGGGTCG TGATCGGCGA CGTCGTGGGG CACGACATCG AGGCGGCCGC GACCATGGGT
CAGCTGCGCT CCGTGGTGCG GTCCTACGCC TTCGAGCTCA CCGTCCCGGG CCCCGTGCTC
GAGCGCGTCG ACCAGCTGGT CGCGGGCATG CGCGTGCAGC GCTCGGCGAG CCTCGTCTAC
GCGACGCTGC GCCGCACCAC GGGGCCGCGT CCCGCGCGGT CCGACGAGGT GTCGGGCTCT
GCCGCGGCCT CGGGCGCCTC GGCCTCCGAC GCGGGCCGCG GGGTCCGGTG GCGGCTCGAG
TACTCCCGGG CAGGGCACCT GCCACCCCTG CTCGTGCGAC GGGGCGTCGT CACGCAGCTC
GACGGCGCCG GAGGGGCGCT CGTCGGCTTC GGGTCGCGGG CCCGGACGAC CGCCGCGACG
ACCCTCGAGC CCGGGGACAC CCTCGTCCTC TACACGGACG GGCTCATCGA GCGCCGGGAC
CGGGCCCTGC GCCAGGGGCT CGACGCGCTC GTGAGCACGG CGGCGAGCAT CACGGCGACC
GACGCCGCCG GCATCGGCGA AGAGCTCCTC GCGCGGCTCG CGGAGGCGCC CGAGGACGAC
GTCGCCGTCG TCGTCGTCCG CGTGCCCGAC CCGGCCAGGG ACGGACTGCT GCCCACGGTC
AGCCCGCGCT CGCGCCGCTG GGTGCTGCCG AGCGAGCCGG CGTCCATCGG GCGTGCCCGG
CACGCCGTGC TGCGCACGTG CCAGGCGTGG GAGATCGCCG ACGTGTCCAG CGCGGAGCTG
GTGGTCTCCG AGCTCGTCGC CAACGGCGTC CTGCACGGGT GGGGCCACAT CGCCCTGCGC
CTGTTCGACA CGGGCGACGG GCTGCGCATC GAGGTCGAGG ACTCGAACCC GTCCCCGCCC
GTGACGACCG ACGGGCACGC CAACCGGCTC GGCGGCTACG GCATGCAGAT CGTCGAGCGG
CTGGCCGACT GGGGCTGGCG CCCGAGCGGC ACGGGGAAGC TCGTGTGGGC GAAGGTCCGG
CCCGTCACCC CACGGCCGGC GCAGCCCGGC GCCTGA
|
|---|
| Protein sequence | MESARPRRGV SGDAPDLGDH RPVTHDEAPG LPLPVLGRAL QGAGVAAVLL DPTAPVPTIL
WANDSFGRLT GHLPDDVVGL PVTVLESDEG SALDLDAVRA AMGPSSDGTP VTWRMLNRRA
DGAHLWCEYA LSQVRGGDGQ VEAWLALLSD VSGQVRDAAG RAGAVRRAET AESVVSMVSG
VSRLLNDMEY PFVLRDICAA YGRGVVAWGG FFLDDGGLGY SDGVPPVALS RPRRSPVSTD
ALGDARVVGE SAGTPTDVTT FIDPLRELVD GYVTGPVDFP LATTYPAGSD AATVSAEVRE
RAGLLDAPGD GPGVPVAQVV VVPGRRAVHG VFVSLRTVDG VDDETSARLV TALVDRVAVG
VDTLRLHARE HTLAETLQRS MLPEQVEVAG LDVWTYYAPT SDDAQIGGDW YDILQIDEEI
AGVVIGDVVG HDIEAAATMG QLRSVVRSYA FELTVPGPVL ERVDQLVAGM RVQRSASLVY
ATLRRTTGPR PARSDEVSGS AAASGASASD AGRGVRWRLE YSRAGHLPPL LVRRGVVTQL
DGAGGALVGF GSRARTTAAT TLEPGDTLVL YTDGLIERRD RALRQGLDAL VSTAASITAT
DAAGIGEELL ARLAEAPEDD VAVVVVRVPD PARDGLLPTV SPRSRRWVLP SEPASIGRAR
HAVLRTCQAW EIADVSSAEL VVSELVANGV LHGWGHIALR LFDTGDGLRI EVEDSNPSPP
VTTDGHANRL GGYGMQIVER LADWGWRPSG TGKLVWAKVR PVTPRPAQPG A
|
|---|
| |