| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3898 |
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| Symbol | |
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| ID | 4257930 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | - |
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| Start bp | 4622187 |
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| End bp | 4629038 |
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| Gene Length | 6852 bp |
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| Protein Length | 2283 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638124587 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_739932 |
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| Protein GI | 114049382 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCAACTCC CTAATAAGAC CCTCCCAGGT TATTACTACC GCATCAATGC TTGCAAAGGT
TCATTGTGTA GCGCTTATAG CCCTTCTATT CTTGTTGGCA CTCCTTCTGC GCCTTCTACC
CCCTCGGCTC CAGCCTCTAT CTCGACTCCT GCAACCAATA CAACAGGGGC GTTTAGCGTT
TCTTGGGCTG GCGTCAGTGG CGCTACGCGT TATGAGTTAC AGCAACGCAT TAATGGTGGC
GTATGGGTTG CGAAATATTC TGGTACGGCC ACCAGTTATG CATTGTCGGG ACTCGCTTCA
GGCACTTATC AATATCAAGC GCGGGCTCGC TCAACGGCGT GCAGTGCCTG GAAGTTATCA
AGTAATACTC AGGTCAGTTT GCCCGTGCTT GGTAGTGATT GGAAAAACCT ATCGCGGGTG
ACGGTTGCCG ATGCGGGCGG TAGTGATATC GAGCCCGCTG AAGTTGTTGA TTTAAATGCA
GCAGCGGTTA AGGGGCAAGC TGGCGTCTCG GGTGGCCAAG CAAGTTATCA CATTCCTATC
GATTTACCGC CAGGACGTAA TGGTGTTCAG CCTTCTATAT CGCTTAGCTA TAACTCCCAA
GGGGGTAATG GCATTTTAGG TGTGGGTTGG TCACTCAATG CTGGCTCAAG CATTAGTCGC
TGTGGTGCAA CCTTTGCGCA GGATGGTTTT ACCCGTGCGG TCACCTTTAA TGCCTCAACC
GATAGGTTGT GTCTTGACGG GCAGCGTTTA ATTGTTGCGA GTGGCAGTTA TGGGGCAAGC
AATGCTGAAT ATCGCACTGA GATGGATTCC TTCGTTAAAG TGGTACAGCA CGGCAACATT
AATGACAGTA ACAGCAGTTT TACCGTCTAT AAACCTGATG GTAGTCGAGC CACCTATGGC
GCAAACGCCA ATAGTCGCTT TGTGCCAAGC GGGTTAAGCA CAGCACTCAG TTGGAAGGTG
ACCCAGGAGT CTTATTCCAA TGGTGCTAAT ACCATCGATT ATCAATACGA TACGAGCGTG
GCGGGTGAGC ATCTTCTTAG CCAGATTTTA TATACAGGTA GTTTGGGCGC ATTAGGTGAT
AGGAATATCA CATTTTATTA TCAGCCTCGG ACTGACAAGC GTAAAAGTTA TCTGGCCGGA
GGGCTAACAA CCAGTACTCG TTTGTTATCA GAGCTTAAGG TCAATGGTGC AGGAGGACAA
TCAGTTCATC AATATCAGTT TGATTATCAA CTGAGTCCGG CTAGCGGGCG CCACTTATTA
CGAGCGCTAG CGCAGTGTGA TGCATTAGGA CACTGCACAC CGCAAACTCA ACTGACTTGG
CGCGATAGCG CATCGACAGT TAAGGCCGAT GAACTCCTTA TTGGTGGGCA AGCGGTATTT
TCAGGTGAGT TGGACATTAA TAAAGTGACC CCGCATGGCG ATGCTAATGG TGATGGTTCC
ACCGATTTCC CTGGATATGA CTCAAATGCA GAGCAGGACA TGCTGGGTCA AAATGGGTTT
ACTCATGAGA AAGCTTGCTA TAACGATTAT GTCTCCGATG GTTGGATTTG TGTTGCATTC
GATGCGGACC ATGACGGTAA AGTCGACCCC TTTAAATCCA TCAACAACAT CTTACATATT
CAATTATCTG CATCAGGGGC AGCTTCGTAT GTGTCAACGG GCATCCCTTT TAATCCGAAT
CGCTTTCCAA GCCCTGATAG GCTAATGAGC GCGACTGACC TCAACGGAGA TGGGGATGTT
GACCTGATGG TCTTTACTGT TGTGAGCGGT AAAGGCTATT GGCGGGCTTA TTTAAATACG
GGTAACGCAT CAACGCCTTA TTCCGCGAAT TCCTTTCAAT TAATCCATGA GACCGCAATA
GACCCTAAAC TGGGAAGTTG GCCAGCAAGA CCTGAAGTTG ATGTCACTAT GGCGGGTGAT
ATTGATGGCA ATGGGATGGT GGATTTTGTG GTGTCAAGCT TGGGCGGCAG TGGTGCGGCG
AATGCCCCTG TCCCCGTGTT GCGAAGTTTC ATCTTAAATA ACAGCACACC GCAACAATGG
AGTGTGCAAT GGTCAAGTGC TCCAACTTAT CCATTCCATA CTGGGGATGG TTTTCATTTT
TTCCAAAAGC TGATTGATAT TAATGGTGAT GAATTAGCGG ACATTATTTC CTGGCGCATG
GTAAATAATG ACCGCGTGAT TGGTTATGAA CTTAATCAGG GACGCGCCAC GTTTGCCCCT
TGGGTGGCTT TTGCGGGCAA TCTACATTTG AAAGAGCGTT TCCATTCGGT GGTGGTCACG
GCGCAAGAGC CTATGGATGT AATTTACCCG CAATACTTTG ACAGCATGCA AACGGCTGAC
ATCGATTTAG ATGGTATTGA GGAGATATTA CTTCCAGGTC AGAGGGTGAT TACAGGTTGT
GCCTATGTCA TGTTTCCCGG TGGGACTTCG GGCAGCGGCA TCAAAAGGAC ACTCTGTGGT
GATGCGCTCT ATGGGGATTT GCCTGTAAAC AGTTTTAATA CGGTTCCCAG CAAACCGATT
ACCAGTTCAG ATTTTGATGA TTCGATTTAT CAATACGATG CAATTAAATT CGTGTTGCAA
GTCGATGGCC GCTGGGGCTT GGTAAAGCAA TCCACCCCAT ATTACGGCTC TGCCCATGAA
TCCCGCTTGG TGGATACATT TGGGGATGGT CTGGTTGATA TGCTCACAAC CTATGGGCCA
CGCGTGCCTG GCACGGGACA GTTTAACGAA ACGTGGATAC AAAACCCGGG TTCAAGCATG
TGGGGCACGC GCTATGGCGC TTACCTCAGC CGTAACTATG GCTCTGGTAA CGGACAAACT
ACCAACGATT ATGCTGCTAC AGATTACCTG CAAGCCGTTA CTGACGGTCT AGGTAATCGT
AGCGAATGGC GTTATCGCCC ACTGTCAACC GGAGAAGGCA GTGCTGACCA AGCTAAGCTT
TATACTACAG ACCATAATGA GGTTGGTTCC GGTTATGTCC ATTTCGCCTC CAGTATGTAT
GTGGTGCAGT CCTTTAAGCA AAGCAACGGA CAGAGTGGCG AAAATGAAAC CCAATATGCC
TATAAAGGCG CGATGTACAA CCTACAAGGA CGTGGCTTTA CCGGATTTAA TCACATCTGG
GAAAAGGATA TGCAGCGGGA TAAGACAGTG CATAGCGTCT TCAAGCAGAA GTTTCCTGAG
GTGGGATTGC TTATGTCACA GACAGTGGTC GCACCGAACA AAAATGGTGT CAAGGGCACT
GTGGTTGAGC TGAAAAATAC CTGGGTCGAT AACCCGCAGC ATAAGGCAAG CCTAGTGCGC
AGCAAAGGTG TGCACCACAA CATTCAGACC AGCTCGCTGC AGAAGTCCTG GGATCTGGAT
GATGGGAGCC TGATGTCAGA GATAAAGCAG ACGGTAGGAA CTAGCCCTAC CGATGTGGAT
GAGTGGGGCA ATATTAAAAA GCAAACTCAA AAAGTGACTG ATTACATAAA GGGTCAGGCG
AATACCTATA CCAGTGTGAC GGAAACAGGT TTTGTGCCCG ATGTTAATAA TTGGTGGCTC
AATAAGTTTA ACTGGATAAA GACGAGCCAC AATACTGCGC AGCGCAACTG GGGAGATGAC
CCGGTTGGCA CGATGGATAA GGCGCAGTGG CAATTGCAAA CGGTCAATAC CTGGGATAGC
AATCATAAGT TACCCACTAA AGTGACTTAT ACTGGCAGTA ATAGTAGTTG CAATCGCGTC
GAAGAAACCG AACTAAACAG TTACGGTCTG CCACGGTGGA CCAAAACCAC AGGACAAAGC
AGTACGTGTA GTGCCATGAC TGCAAGGCAA ACGAGCTTTA CCTACACCAA AGACGGCACA
ACTCAGGTTG ACGATGGCTA TCTGCCTTAC AAGGTTATCA ATGCCAAGGG CCATATCACC
ACAACCGAAT ACGATATGGG GCTAGGACTC CCCACCAAAG TGATAGCGCC CAACAATATC
GTCACTCAAA CAGAGTACGA TGGTATCGGT CGTCCGGTGC AGGTCAAACA GACAGGCAGT
CCAACCCGCT ATTTACGCTA TTTACTCGCC AATGAGGGTA ATAATCCGCC CCAGGACAAC
GACAATATTC CTGTGATGAT GACCCGCACC AGTGGTGCCG GTATGCCTGA AACGGAGCAG
TATTTTGACG GCCAAGGTCG TTTGCTGCGC ACGGCAACCC AGGGCTTTGA TGGGGGGTAT
CAGTATCAGG ATAAACATTA TGATGCGCTT GGGCGTTTAA CCCGAGAATC GACGCCCTAT
GGTAACGGCA CGGCGGCAGA CTATACCGAG TTCAGTAATT TTGATGCGCT CGATAGACCC
GGCAGACGCA CCATTCCTAA TGGGCGCTCC GGTGGGCTGG AGTCCCTATA CTCCTATAAC
GGGTTAACCA CGGATATCAA TGTCGAAGGA CGCTTGATGT CGCGCACCTA TGGTAGTCAA
GGCTGGTTGT ATGAAACCGT GGATGCACAA AATGGCACCA ACCGCTTTGC TTACGATAGT
GCCGGTAGAC CGTTAGTTAT CCGCGATGCT AACAATTGTG ATATCAAAGC AACTTACAAC
GGTTTTGGCC ATAAAACCCA GGTCATTGAC CCTAACCAAG GCACCACCAA TTTTGGTTAC
AACAGCGTAG GCGAATTGGA TAAGCAAACC GATGCCAATG GCGTGGTACA AACCTACGTA
CTCGATGTAC TGGGGCGCGT TACCAGTAAA ACCACCACGG GCGGCAGTGC GCCAGGTACG
GCAACTTTTG TGTGGGACAC GCCCAAACAA GGCCTACTCA CCTCTGAAAC TGAAAACGGC
GTCGCTCGCA CTTATGCTTA CACAACTGCA CTGCAATTGG CGCAAACCAC GGTGACCGTT
GATGGTGTAA GTCGTACGGT TAAACATCAA TACGATGGCT TTTATGGTCG TCCTAAGGCA
CTCGAATACC CGAACGGCTT AACACTCAAA TATGCCTATA ACGATTACGG TTATCTCGAG
CAGACCAGCA ATGCTGCTTC TGGCTATCTC TATCGTCAAG TCACAGCCAT GGATGAGGCA
GGCCATATTA CCGGAGCTAA CCTAGCCAAC AGAGTGATGT CTGAATCACG GGTTTATTAC
AGCGAAGGCA CCATGGCGAG TGTCGAAGTG GATGGCCCGC TTGGGCGGAT TCATGCGCAC
TACTATGATG GCTATGATGA GTTTATGAAT CTCACCAGTG AACGGGATGG GGTGACAGGC
CTAACGAAGA GTTACCGTTA TGACACGCTT AATCGCCTAA CCGAGTATCA GTTTAGCAAT
ACCAATCCCA CCTTTAGTGC TACGGTTAAC TATGCCTACG ATAAGGTCGG TAACTTCCTT
AAAAAGACCG ACTACAGTGC CAATAGCAGC ACTGCCTACC GTTATGGCGG CAGCGCCTGT
GGCTACAAGC CAAACGCAGT GTGCCAGCTA GATAAACTCA ATGGCACCAC AGTGAGTTTT
CAATACGATA ATCGCGGTAA TTTACGTGTG GGTGATGGTC TCACCATGAC CTACAGCGCC
ATGGATAAGC CACTGAGTGT CTCAGGCCGC AGTGCCACCA CAAGCTTTAT CTATGGCAGC
GATAATATGC GCGCCAAGCA AAGCCGCACA GTCGGCAGTA CGACGACAAC TACCTATTAT
GTTGATAAGT ACTATGAAGC CGACAGCGAT GGTAGCTGGC GTGCCTACCT TGATGATATC
GCGGTACTCA GTTATACCTC ACAGCGCGGT CATTTACTGC AATTTACTCT CAAGGATAGA
TTGGGTAGTG CCACCACCCT AGCGGACCAA AATGGCAATA TCGTTAGTCA ACGTTATTTT
GACCCCTTTG GACGAACCGC ATCGACAGGA GGTGGGCATC GTACTGATAT GGTGAATAAA
AATACGCTGC AATCAACGCT GCAGGATTTG GATATCACCA ATAAGAACCG CCGTGGTTTT
ACCGGCCATG AGCATCTGAA TGAGCAGCAG TTAATTCATA TGAACGGGCG GGTGTACGAT
TATAACCTTG GCAGGTTTAT GTCGGTGGAT CCGTTTATTC AGAGTCCAAC CTCTACTCAG
AGCGTCAACC CGTACTCCTA TATCATGAAC AACCCGCTAG CGGGGACCGA TCCGACAGGC
TATGCGGCTG ATTATATTGC TGGGGCGTCA TTTGGGTTTA ACGCTGACTT AACTGCTGCA
CAGGTCGAGC TGCTTAATAA TGCGGATTCA TGTAGCTATT GCACCGGGGA GTTCGCTGTC
GGTGTAAATT TAGGCAGTGA TTTGAAATGG GCGTACAAAG ATACGGGCTC ATTAGCTGCC
AGCGTGATCC TTTTAGGAAA AGCGACGTTG TCAGCCTTAC CAAATAGTGG TGCTGATAAC
CGCATTAATA CTGATACCGG CAGTATGGCT GATGTGGGAA GTTTAGGATC GAGTAATACG
GATCAGTCTA TGGTGGACCA TCTAGTCGAT GGGCGAGTTA ATGCTGACAA AACTGATATT
GGAAATGCAA CTTTTTCACA AGGACGAGAT GGCGAAGGAA ATTTGACCCC CGTTAGACAG
AGTGTATCAC GCCAACCAGT ATTTAGTGAT ATCCATGCTG AGGAGCAGAC TTTAAAAGAT
TTACGCGGAA AACCAAGGCC TTGGACTGTT GCGGTTGATC AAAACCCTTG TGATTCATGT
TCTGATAAAC TAAGCCAAGC TAATGTTGAA AAAGTAGTAG TTCCTATGAA CCCTGATAAA
CCACAAAACA AGCCCAAAGG CGTTGCAATG AAAGCTGCAG CAGGAAAAGG AATCGCGGTG
CCAAAGGTTG TGAGAGTTTC TGGAAGGTTA GATAGTCTAA AACTGGATAA GCTAGATAAA
AGAAAACGGT AA
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| Protein sequence | MQLPNKTLPG YYYRINACKG SLCSAYSPSI LVGTPSAPST PSAPASISTP ATNTTGAFSV
SWAGVSGATR YELQQRINGG VWVAKYSGTA TSYALSGLAS GTYQYQARAR STACSAWKLS
SNTQVSLPVL GSDWKNLSRV TVADAGGSDI EPAEVVDLNA AAVKGQAGVS GGQASYHIPI
DLPPGRNGVQ PSISLSYNSQ GGNGILGVGW SLNAGSSISR CGATFAQDGF TRAVTFNAST
DRLCLDGQRL IVASGSYGAS NAEYRTEMDS FVKVVQHGNI NDSNSSFTVY KPDGSRATYG
ANANSRFVPS GLSTALSWKV TQESYSNGAN TIDYQYDTSV AGEHLLSQIL YTGSLGALGD
RNITFYYQPR TDKRKSYLAG GLTTSTRLLS ELKVNGAGGQ SVHQYQFDYQ LSPASGRHLL
RALAQCDALG HCTPQTQLTW RDSASTVKAD ELLIGGQAVF SGELDINKVT PHGDANGDGS
TDFPGYDSNA EQDMLGQNGF THEKACYNDY VSDGWICVAF DADHDGKVDP FKSINNILHI
QLSASGAASY VSTGIPFNPN RFPSPDRLMS ATDLNGDGDV DLMVFTVVSG KGYWRAYLNT
GNASTPYSAN SFQLIHETAI DPKLGSWPAR PEVDVTMAGD IDGNGMVDFV VSSLGGSGAA
NAPVPVLRSF ILNNSTPQQW SVQWSSAPTY PFHTGDGFHF FQKLIDINGD ELADIISWRM
VNNDRVIGYE LNQGRATFAP WVAFAGNLHL KERFHSVVVT AQEPMDVIYP QYFDSMQTAD
IDLDGIEEIL LPGQRVITGC AYVMFPGGTS GSGIKRTLCG DALYGDLPVN SFNTVPSKPI
TSSDFDDSIY QYDAIKFVLQ VDGRWGLVKQ STPYYGSAHE SRLVDTFGDG LVDMLTTYGP
RVPGTGQFNE TWIQNPGSSM WGTRYGAYLS RNYGSGNGQT TNDYAATDYL QAVTDGLGNR
SEWRYRPLST GEGSADQAKL YTTDHNEVGS GYVHFASSMY VVQSFKQSNG QSGENETQYA
YKGAMYNLQG RGFTGFNHIW EKDMQRDKTV HSVFKQKFPE VGLLMSQTVV APNKNGVKGT
VVELKNTWVD NPQHKASLVR SKGVHHNIQT SSLQKSWDLD DGSLMSEIKQ TVGTSPTDVD
EWGNIKKQTQ KVTDYIKGQA NTYTSVTETG FVPDVNNWWL NKFNWIKTSH NTAQRNWGDD
PVGTMDKAQW QLQTVNTWDS NHKLPTKVTY TGSNSSCNRV EETELNSYGL PRWTKTTGQS
STCSAMTARQ TSFTYTKDGT TQVDDGYLPY KVINAKGHIT TTEYDMGLGL PTKVIAPNNI
VTQTEYDGIG RPVQVKQTGS PTRYLRYLLA NEGNNPPQDN DNIPVMMTRT SGAGMPETEQ
YFDGQGRLLR TATQGFDGGY QYQDKHYDAL GRLTRESTPY GNGTAADYTE FSNFDALDRP
GRRTIPNGRS GGLESLYSYN GLTTDINVEG RLMSRTYGSQ GWLYETVDAQ NGTNRFAYDS
AGRPLVIRDA NNCDIKATYN GFGHKTQVID PNQGTTNFGY NSVGELDKQT DANGVVQTYV
LDVLGRVTSK TTTGGSAPGT ATFVWDTPKQ GLLTSETENG VARTYAYTTA LQLAQTTVTV
DGVSRTVKHQ YDGFYGRPKA LEYPNGLTLK YAYNDYGYLE QTSNAASGYL YRQVTAMDEA
GHITGANLAN RVMSESRVYY SEGTMASVEV DGPLGRIHAH YYDGYDEFMN LTSERDGVTG
LTKSYRYDTL NRLTEYQFSN TNPTFSATVN YAYDKVGNFL KKTDYSANSS TAYRYGGSAC
GYKPNAVCQL DKLNGTTVSF QYDNRGNLRV GDGLTMTYSA MDKPLSVSGR SATTSFIYGS
DNMRAKQSRT VGSTTTTTYY VDKYYEADSD GSWRAYLDDI AVLSYTSQRG HLLQFTLKDR
LGSATTLADQ NGNIVSQRYF DPFGRTASTG GGHRTDMVNK NTLQSTLQDL DITNKNRRGF
TGHEHLNEQQ LIHMNGRVYD YNLGRFMSVD PFIQSPTSTQ SVNPYSYIMN NPLAGTDPTG
YAADYIAGAS FGFNADLTAA QVELLNNADS CSYCTGEFAV GVNLGSDLKW AYKDTGSLAA
SVILLGKATL SALPNSGADN RINTDTGSMA DVGSLGSSNT DQSMVDHLVD GRVNADKTDI
GNATFSQGRD GEGNLTPVRQ SVSRQPVFSD IHAEEQTLKD LRGKPRPWTV AVDQNPCDSC
SDKLSQANVE KVVVPMNPDK PQNKPKGVAM KAAAGKGIAV PKVVRVSGRL DSLKLDKLDK
RKR
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