Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_0468 |
Symbol | |
ID | 4256684 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 532393 |
End bp | 533718 |
Gene Length | 1326 bp |
Protein Length | 441 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 638121082 |
Product | TPR repeat-containing protein |
Protein accession | YP_736528 |
Protein GI | 114045978 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGTGA TCAACAAGAT GCTGCAGGAT CTCGAAAAGC GCCAGCAGGG GCATTCTCTC AGTAATGTCG CTGTGCATCA GGCGCAGTAT TTAGGGCGCC CTAATCCATC ACGCAAATGG TTAGTAATCA GCTTAGTGTC GCTGCTGGTG GGCGGCTTAT CGGTCTATGC TTTTCAGGCG AGTTACGGCG TAAAGAGCAT TGCTGATAAC ATTGCAAATC CTGTGATGAG TTTGCAAACT CAGCCGGATA ACGGCAGCCC ACAGATAGAT ACGAGTCCTC TGGAAACCGA AACGACGACA TCTACAGAGC CAACTGCCGA GATGGCGCAA GTGAGTCCGT CATCGACAGA GGTTCCTGCA AAGGATATGT CTGCGTCAGC AGAATCTGCC CCAAGAGTGG CTCAATCTCC CCGTGTCAAC GCGGCGCAGG TAGAACCAAC GAGTGAACCG ATAACCGAAT CAGTTGCGGC AAGCCCCTCA ACCGATACGC CTAACAAGGC GGTATTAACC CAAGAGCAGG CGCAAACACA GGCTGAGCCA CAACAGGTTG CGGTTAAAGT AAATCAAGCA GACGTTAACG CAAATCAGAG CGAAGTAAAA ATTACTCAAA CAGAGCCTAA GGCGAGTGAG CCTTTCGTGC CTGCTGCGAC TCAAGCTTCG AGCCAAACTA CGCCTCAAGC TTCAAGCCAA GCTTCGCCTC AGGCTCAGTC AACGGGGCAA ATGGCGATTA GAGAAGTGAA GTTGTCCCCA AGCCAACTCG CGCAAAAGCA GTTAGTGTTA GCGGCGGATG CCGAAAAGCA GGGGCAGCTG GTTAAGGCGA TGGATTACTA CGCTAAAGCA CTCAAGCTCG ACCCAAGCTT GCACGAGTCG CGCAAACAAC TGGCGGCACT GCATTATGGT CAAGGTGAGC TGGCGCAAGC GGCCGAAGTG TTGGCGCAGG GACGATTGCT TTATCCGCAA GAGTTTGAAT TTGCTTTGCT ATTGGCAAGG GTGCAACATG CTATGGGCGA GACAGATTCG GCTCTTGCTA GCCTTGCTCA AATCCCCGAT AGCCATAGCT TGGCGAGGCA AAAGTGGTTA GCGCAAACGG ATTTGGCCCA AAAACAAGGG CAATATCCGT TAGTCGAGCA GGCTTACCGT AAGTTATTGC AGCAAGAGCC ACAGCAGGGG AAATGGTGGA TGGGATTAGC CTATGCCCTC GATTCACAGC AACAATTCGG CCCCGCCAGT CAGGCCTATC GCACCGCCTT AAGTTATTCA GGCCTGTCGA CCCAAGCCAC GGCTTTTATT GAACAACGTT TACAACAACT AGGAGATAGC CAATGA
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Protein sequence | MSVINKMLQD LEKRQQGHSL SNVAVHQAQY LGRPNPSRKW LVISLVSLLV GGLSVYAFQA SYGVKSIADN IANPVMSLQT QPDNGSPQID TSPLETETTT STEPTAEMAQ VSPSSTEVPA KDMSASAESA PRVAQSPRVN AAQVEPTSEP ITESVAASPS TDTPNKAVLT QEQAQTQAEP QQVAVKVNQA DVNANQSEVK ITQTEPKASE PFVPAATQAS SQTTPQASSQ ASPQAQSTGQ MAIREVKLSP SQLAQKQLVL AADAEKQGQL VKAMDYYAKA LKLDPSLHES RKQLAALHYG QGELAQAAEV LAQGRLLYPQ EFEFALLLAR VQHAMGETDS ALASLAQIPD SHSLARQKWL AQTDLAQKQG QYPLVEQAYR KLLQQEPQQG KWWMGLAYAL DSQQQFGPAS QAYRTALSYS GLSTQATAFI EQRLQQLGDS Q
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