Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_0226 |
Symbol | |
ID | 4255687 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 241969 |
End bp | 242619 |
Gene Length | 651 bp |
Protein Length | 216 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638120830 |
Product | cytochrome c biogenesis protein CcmA |
Protein accession | YP_736288 |
Protein GI | 114045738 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG4133] ABC-type transport system involved in cytochrome c biogenesis, ATPase component |
TIGRFAM ID | [TIGR01189] heme ABC exporter, ATP-binding protein CcmA |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.0055541 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGACAAATA TAACTTCAGT AAACACACTG GTATCGGCGA GCAAGCTGAC ATGTATCCGC GAAGAACGCA TCCTATTTGA TGAATTAAGT TTTGATATAA ATGCTGGCGA TATTGTCCAG ATTGAAGGCC CAAATGGCGC CGGCAAAACC AGCTTATTAC GTATATTGGC TGGCTTATCT CGCCCTTACG CTGGGCAAAC CTTTTATCTC AACGAAGATA TCAATCGTTG CCGCGATGAA TATAACGAAG ATTTATTGTA TTTAGGCCAC CTTGCGGGAG TGAAATCCGA ATTAACTGCG GAAGAAAACC TTAACTTCAA TTTAAGAATC AGTGGCTATG ATGATTTTGA TACTGCAGCT ATTTTAGCTA AAGTGAATTT AGCTGGATTC GAAGAAGCGC TGGCTGGACA TTTATCCGCT GGTCAACATC GCCGCACCGC ATTAGCAAGA CTTTGGCACA ACGATTGTAA AGTGTGGATC CTCGATGAAC CTTTTACTGC CATTGATAAA AAAGGTGTCG AAGAGCTTGA GCAATTATTT ATTCAACATG CGGATAATGG TGGCTGTGTG ATCCTCACCA CCCACCAAGA TATGGGCATT ATCAAAGATG ATAGGCTTCG TAAAATTCGT CTAGATTATC GCTTCGTATA A
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Protein sequence | MTNITSVNTL VSASKLTCIR EERILFDELS FDINAGDIVQ IEGPNGAGKT SLLRILAGLS RPYAGQTFYL NEDINRCRDE YNEDLLYLGH LAGVKSELTA EENLNFNLRI SGYDDFDTAA ILAKVNLAGF EEALAGHLSA GQHRRTALAR LWHNDCKVWI LDEPFTAIDK KGVEELEQLF IQHADNGGCV ILTTHQDMGI IKDDRLRKIR LDYRFV
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