| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3434 |
|---|
| Symbol | |
|---|
| ID | 4254000 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 4106357 |
|---|
| End bp | 4107415 |
|---|
| Gene Length | 1059 bp |
|---|
| Protein Length | 352 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 638120072 |
|---|
| Product | secretion protein HlyD family protein |
|---|
| Protein accession | YP_735557 |
|---|
| Protein GI | 113971764 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACCGG ATCAACAATT TGCCCGCCTT GTGAAAATCG CCATGCTCGG TTTTGTGGCC
GTGTTTGGCT ATTTTATGTT TGCCGACGCT ATGATGCCCT TGACCCCACA GGCCATGGCA
ACCCGTGTGG TGACTAAGGT GACTCCGCAG ATCAGCGGCA AGATTCAAAC CATTAATGTG
AAGAATAACC AAGTGGTCGC CAAGGGCGAT TTACTGTTTC AAGTCGACCC TGCGCCCTTT
GAGTTAGCCG TGTCTCAGGC CAAATTGGCC CTAGAGCAAG TGCGTCAGGA CAATGCTGAA
TTAGATGCTT CGTTGTTGGC GGCCAAGGCC GAAGTGAATG CCAGCTCGAC TACGGCACAA
CAAAAACGCC GCGAGGCTAA ACGTTTAGAT GCGCTGTATG CTACCCATGG TGTGTCACAG
CAGCAACGTG ATCAGGCCGA TAGCGACGCG GCGGCGGCCG AGGCGAATCT GTCAGCCGCC
AGTGCTCGCC TCGAAAAACT CAAAGTGAGC CGTGGTCTCT ATGGTGAAGA TAACCTCAGA
ATGCGCCAAG CAAGAAATGC ATTGGAGCAG GCCGAGTTGA ATTTATCCTA TACCCAAATT
CACGCCGACC AGGATGGTGT AGTGACTAAC CTGCAGCTTG AGGTCGGTAG TTTTGCCTCT
GTGGGTCAGC CATTACTAGC CTTAGTCTCT GATAAGTTAG ATATTATTGC CGATTTCCGT
GAAAAAACCT TAAGGGGTGT TAACGCATCT TACCCTGCAT TAATCGCCTT CGACGGTGAA
CCAGGCCGTT TATACCGCGC CCAAGTGAGC AGTGTCGATG CCGGTGTGAG TGCGGGGCAG
TTTGATGCCA ATGGCCGCTT AGCGGCGCCG CAGGAGTCGG ACCGTTGGGT GCGTGATGCG
CAGCGCTTAA GACTGCATTT AGTCTTAGAT GACGATGCCA TGAATGGCTT GCCAGCAGGT
GCGCGTGCCA CTGTGCAATT ACTGCCTGAC AATGCGCTGT TTAGCCTGCT AGCTAAGGTG
CAGATTAAGG TCATTAGCCT GCTCCATTAC ATCTATTAA
|
|---|
| Protein sequence | MTPDQQFARL VKIAMLGFVA VFGYFMFADA MMPLTPQAMA TRVVTKVTPQ ISGKIQTINV
KNNQVVAKGD LLFQVDPAPF ELAVSQAKLA LEQVRQDNAE LDASLLAAKA EVNASSTTAQ
QKRREAKRLD ALYATHGVSQ QQRDQADSDA AAAEANLSAA SARLEKLKVS RGLYGEDNLR
MRQARNALEQ AELNLSYTQI HADQDGVVTN LQLEVGSFAS VGQPLLALVS DKLDIIADFR
EKTLRGVNAS YPALIAFDGE PGRLYRAQVS SVDAGVSAGQ FDANGRLAAP QESDRWVRDA
QRLRLHLVLD DDAMNGLPAG ARATVQLLPD NALFSLLAKV QIKVISLLHY IY
|
|---|
| |