| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2582 |
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| Symbol | |
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| ID | 4253153 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 3073249 |
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| End bp | 3074268 |
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| Gene Length | 1020 bp |
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| Protein Length | 339 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638119217 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_734710 |
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| Protein GI | 113970917 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.929496 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACAAACT CACCGAAACT GGCTCGCCAA CAACCCGCCT TATCCATTGT CGATGATGCT
GCATTGCCCG CAACTCAACC TGCAAAGAGT GCCGAGTTAC CGCTGAACTT TTTCGAGCAT
TCTTCCCTCG AGACCATTGA GCTCTTTATT CAACATTTAA CTGAAGCCGT GATCTTAGTG
AATGCCAATG GCTTTATCCG TTCGTGCAAT CAGCGCAGTG CCGAGCTACT CGATTGCCCG
CAGGCGACTT TAAAGGGCCA AGACTGGCGC AATTTTTTGA CTGAACATCA TCAAGCGCGC
TATGACAATC TCCTGAGCCA CGATGTGCAA TTAGGTACCA ACTGCGGTCA ACCCGTGCAG
CACCCAGCGC AGGAAACTAC GCTGATCTGC GCCTCTGGCA AGGCCAAAGA TGTGGAGTTG
TCTATCTCTT ATATTCCCAG CCATGAACCT GTGTTTGTGA TGGTAATGCA CGATTTAACT
CAGCATAAGG CGGAAAACCA AAAGCTGCGC AAGTTGGCCG CCACCGACTC CCTCACCCAA
CTGGCGAACC GTCGCTATTT TGATGAAATG CTGCAACAAC ACTGGGAAGA ATGCACCGCC
AAACTGCGCC CTATCAGCGT AGTCATTATC GATGTGGATT ATTTTAAGGT GTTTAATGAT
CAGTTTGGTC ATATCCAAGG TGATGAATGT CTTAGAAAAA TTGCCAAAGT GATCGCCACT
ATTGTGCCTA TCGACATCGG TCTTGCTGCC CGTTATGGCG GCGAAGAATT TGCGCTGATC
CTGCCTAATC ACAATGCCAA AATGGCGCTG ACCATAGCGC AAAAAATCCA GCAAGGGATT
AATAACATTC GCTTTACCGA CCAAGGGCTC AGGGATTATG TCTCGGTAAG CGCTAGCCAA
GGGATTGCCA GTGAAGTCAA TGGCCAGTTC CGTACCTCAC TCGCCATGGT GTGCGCCGCC
GATACCGCGC TTTACCGCGC CAAGGCCGAT GGTCGTGACC GGATAAACGC CTCGCTGTAG
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| Protein sequence | MTNSPKLARQ QPALSIVDDA ALPATQPAKS AELPLNFFEH SSLETIELFI QHLTEAVILV
NANGFIRSCN QRSAELLDCP QATLKGQDWR NFLTEHHQAR YDNLLSHDVQ LGTNCGQPVQ
HPAQETTLIC ASGKAKDVEL SISYIPSHEP VFVMVMHDLT QHKAENQKLR KLAATDSLTQ
LANRRYFDEM LQQHWEECTA KLRPISVVII DVDYFKVFND QFGHIQGDEC LRKIAKVIAT
IVPIDIGLAA RYGGEEFALI LPNHNAKMAL TIAQKIQQGI NNIRFTDQGL RDYVSVSASQ
GIASEVNGQF RTSLAMVCAA DTALYRAKAD GRDRINASL
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