Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_2276 |
Symbol | |
ID | 4252847 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 2720087 |
End bp | 2720782 |
Gene Length | 696 bp |
Protein Length | 231 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638118901 |
Product | anti-ECFsigma factor, ChrR |
Protein accession | YP_734404 |
Protein GI | 113970611 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3806] Anti-sigma factor |
TIGRFAM ID | [TIGR02451] anti-sigma factor, putative, ChrR family |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTAAAC ATCATCCCCA TACCGATTTA CTGTTAGCCC ATGCACAAGG CGAGCTGCCT TTATCCATGT CTATCGCAAT CTCGGCCCAT TGTGCCCTAT GTCATGAGTG CCAATCCCAA GTCAGCCGCT TTACAGAGCA GGCGGCTGAA CTCGCCTTTT TAGCGCCGAG CAAAATCACT GAACAAGCTT TAATCAGCGA AACCGATTCA GCACAAGATG ACGCTTGGCA GCAAATGATG TCACAGATTA TGGCCTTACC CGAATCAACG CCAACTGAAA GCGACTATCC TGCTAAAACT ACGGTTTCCC TTAATCATAA ACATGTGCGT TATGAGATCC CGAGAGTGTT TCGTCAGCAT ATCGCCCATC CATGGCAACA AATTGGCAAG GTCAGCCGCA TGCGTTTCGA TGTGGATGAA AATAATACCC GCGCGAGCCT TTTACATATC GATGCTTTAG GTGAGATCCC GCAGCACACC CATAAAGGAT ACGAACTGAC CTTGTTATTA GCGGGCGAAT TTTCGGATCT TCACGGCCAA TATGTTCCTG GTGATTTTAT TATCTTAGAC GGGAAAACCC ATCATTCTCC CAAGACCCAA ACAGGATGCC TCTGTTACAC AGTGTTAGAC GCACCGCTGT ATTTTACAAA AGGGCTCAGT AAATTATTGA ACCCGATTGG AGAACTGATT TATTAA
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Protein sequence | MIKHHPHTDL LLAHAQGELP LSMSIAISAH CALCHECQSQ VSRFTEQAAE LAFLAPSKIT EQALISETDS AQDDAWQQMM SQIMALPEST PTESDYPAKT TVSLNHKHVR YEIPRVFRQH IAHPWQQIGK VSRMRFDVDE NNTRASLLHI DALGEIPQHT HKGYELTLLL AGEFSDLHGQ YVPGDFIILD GKTHHSPKTQ TGCLCYTVLD APLYFTKGLS KLLNPIGELI Y
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