| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2136 |
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| Symbol | |
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| ID | 4252709 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 2555134 |
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| End bp | 2557248 |
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| Gene Length | 2115 bp |
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| Protein Length | 704 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638118760 |
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| Product | alpha amylase, catalytic region |
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| Protein accession | YP_734266 |
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| Protein GI | 113970473 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAATTTTC TATTATCTAA CAGCAGCAAA CGTCGCGCTT ATCGCTGGCA ACAGGGATTT
AGCATACTGG CCCTCAGCAG CATTAGCACC TTTTGCACCA TGGCCGCACC AGCAATCAGC
ACTCAAGCAA CGGCGGCTAA AACCATGGCT GCCAATCCAA ATGTGGCCGA AGGCGAAATC
CTGCCAGCCC GTCACAATGA CGAGCAAGCA AATAAGTTTA AACCCGTTGT TTATCAAATT
TTTACCCGAC TCTATGGCAA TAAAAACACC ACCAATAAAC CTTGGGGCAC GATTAGCGAA
AACGGTGTGG GTAAATTTAA TGATATTGAT GACATAGCAC TCAAAAGTAT CAAAGACTTA
GGCGTTACCC ATGTGTGGTA TACGGGTGTG CCCCACCACG CCTTAATTGG CGATTACAGT
GCAATTGGCG TAAGTCACGA TGATCCCGAT GTGGTTAAGG GCCGCGCCGG TTCGCCCTAT
GCGGTTAAAG ATTATTACAA CGTAAACCCC GATTTAGCAG TCTACCCCGC CAAGCGCTTA
CAGGAGTTTC AGGCTCTTAT CGAGCGCACC CACAAGCAAG GCTTAAAGGT GATTATCGAT
ATAGTCCCTA ACCATGTGGC GCGTAATTAC CATTCCATCA CTAAGCCCGA GGGCGTGCGT
GATTTTGGTG AAGATGATAA TCAAACCCTT GAATATGAAA GGCATAATAA CTTTTACTAT
GTGACTGATA AAAAGCAATC CTCTGGCTTT CAAGTGCCCG ATTTGCCTGA TACCCTCAAA
CCGTTAGGCG GCGAATCGCA TCCCCTAAGT GATGGTCAAT TTGAAGAGAT CCCCGCCAAA
TGGACTGGCA ACGGCTCACG CCTTGCCAAA CCGGATATGA ATGACTGGTA TGAAACCGTT
AAAATCAATT ACGGTGTCCG CCCCGATGGC AGCCATGATT TCCCCGCACT GCCGCCACGC
TATGCCACAC TCGGCGCCGA GCAGCACTAT GCTTTTTGGC AGCAACATAG CCATGAATTA
CCTAACTCTT GGATCAAGTT CAATCAAATT GCCCAATATT GGTTAGCGAT GGGAGTCGAT
GGATTTCGTT ACGATATGGC CGAAATGGTG CCAGTCGAGT TTTGGAGCTA TTTAAATAGT
CATATAAAAC ATAGCCATCC CGAAGCCTTT ATCTTAGCAG AGGTCTATAA CCCTGCGCTG
TATCGCGACT ATATTCATCT CGGCAAAATG GACTACCTCT ACGACAAGGT CGATCTTTAC
GACACCCTCA AAGCCATTAT GGCAGGACAA AAAAGTACCG CGCAGATCGC CGCGGACCAG
GCCAAAGTGC AAGATATCGA CTCGCATATG CTGCATTTTT TAGAAAACCA CGACGAGCAG
CGCATCGCCA ATGCCGCCTT TTTAGGCGTA TTAACTGGTA ACACCTCGAC AGATGCGGTC
GATCCCCGCT ACGCCCTGCC TGCAATGGTG GTGTCGGCGA CCTTAAGTAC CTCACCCACC
TTGCTTTATT TCGGTCAAGA AGTGGGAGAA GCGGCGACGC AAAACCTAGG CTTTGGCCAT
GCGTCACGCA CCAGTATTTT TGATTATGCG GGTGTTCCCG CCCATCAGCG CTGGATGAAT
CAAGGTAAAT TTGATGGTGG CCAATCAACC GCCGCAGAAG TTGCGCTACG TACCTATTAC
CAAAAATTAT TGAACCTGAG CACGGGGAAA AATGCACCCG CGCTCTTAGG GAAATATCAC
TCGCTAGATG CTGCCAACCG CAGCGCGGTA TCGGCTGCAA AGGCTAGCAA TAAGGCTAGC
AATAAGACAA ACAATGGCAG CGCAACGGGT TATGATGACT CAACCTTTGC CTTTGTCCGC
TTTGAGGCCC ATACAGCCAA TAGCAAAGGT CAAAAGCTGA TTATTGTCAG TAACTTTAGT
CAAACCCAAG CCAAGTTATT TTCCCTTAAA CTCCCCAAAT CTTTGATTGC GCAATGGCAG
TTAACCGATG CAAGCTATCC GCTTAAGGAT TTACTGGAAG AACATACGGC GCAGTTAATT
GTCGAGCGAG GTGAAGGACA GGTTCAGTTG CAGCTTGCAC CTCTCTCCTC CGCGATATTT
GAACTCGTCC ACTAG
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| Protein sequence | MNFLLSNSSK RRAYRWQQGF SILALSSIST FCTMAAPAIS TQATAAKTMA ANPNVAEGEI
LPARHNDEQA NKFKPVVYQI FTRLYGNKNT TNKPWGTISE NGVGKFNDID DIALKSIKDL
GVTHVWYTGV PHHALIGDYS AIGVSHDDPD VVKGRAGSPY AVKDYYNVNP DLAVYPAKRL
QEFQALIERT HKQGLKVIID IVPNHVARNY HSITKPEGVR DFGEDDNQTL EYERHNNFYY
VTDKKQSSGF QVPDLPDTLK PLGGESHPLS DGQFEEIPAK WTGNGSRLAK PDMNDWYETV
KINYGVRPDG SHDFPALPPR YATLGAEQHY AFWQQHSHEL PNSWIKFNQI AQYWLAMGVD
GFRYDMAEMV PVEFWSYLNS HIKHSHPEAF ILAEVYNPAL YRDYIHLGKM DYLYDKVDLY
DTLKAIMAGQ KSTAQIAADQ AKVQDIDSHM LHFLENHDEQ RIANAAFLGV LTGNTSTDAV
DPRYALPAMV VSATLSTSPT LLYFGQEVGE AATQNLGFGH ASRTSIFDYA GVPAHQRWMN
QGKFDGGQST AAEVALRTYY QKLLNLSTGK NAPALLGKYH SLDAANRSAV SAAKASNKAS
NKTNNGSATG YDDSTFAFVR FEAHTANSKG QKLIIVSNFS QTQAKLFSLK LPKSLIAQWQ
LTDASYPLKD LLEEHTAQLI VERGEGQVQL QLAPLSSAIF ELVH
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