| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2082 |
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| Symbol | |
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| ID | 4252655 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 2478353 |
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| End bp | 2481181 |
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| Gene Length | 2829 bp |
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| Protein Length | 942 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638118706 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_734212 |
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| Protein GI | 113970419 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR01782] TonB-dependent receptor |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAATCTC CAATCGCTCG ACAATTAGGT TCTCTGATAC CACAACAAGC GCATCCTGTC
GCTAGGGTCC ACAAACGTCT CACGTCGCGT CTCTCGGCCT TAAGCTTAGC CATGGTGCTC
GCTGGACTGA GTCACAATGC TCTCGCCATA GGCAAACTTG AGGGGCAAAT TCGCGATAAC
AGCAGCCAAC AGCCCCTTGC AGGTGCAACC GTCACCTTAA AAGAGCTCAA CCTTAGCCAA
CAAGCAGGCC GTGATGGCCG TTTCTTTTTT GTCGGTGTGC AGGATGGCGA TTACACCTTA
GTGGTCAACT ACCTAGGGGC GATGCCAAAC GAGCATAGGA TCAGCATTCG CGATAAACAA
ACCACACTGC AAGATATCAA CTTAAGCAGC CAAGATGATG TGGAGCATAT CCGCGTGGTC
GGCCAACAAG GCGCATTAAG TAAATCCATG AACCGCCAAC GCGGCGCCGA CAATGTGCTG
AGCGTGGTCA GTGCCGATGT GCTGGGGAAT TTCCCCGACA GCAATATCAG TGAATCACTG
CAACGGGTGC CAGGGCTGTC TATCGAGCGG GATCAGGGCG AAGGTCGCTT TGTGCGCGTG
CGCGGTATGG CGCCTGACTA TAACTCAGTG TCGATGAACG GCACGCGCTT ACCCTCACCC
GAAAGCGATC GCCGTGCGGT TGCCCTTGAT GTAGTGCCAT CGGATCTATT GCAATCGGTA
GAAGTGAGTA AAACCTTAAC ACCGGATATG GATGCCGATG CACTGGGCGG CGCCATTGAG
GTCAAAAGTC TGTCGGCCTT CGATCGCGAT GATACTTATC TCAACCTCAA CGCCGAGGCG
AGCCAAGATA CCTTAACCGA CAATACCAAT CCCAAACTTG CCGCCAGCTA CAGCGATATC
TTTGCCGACA AGCTAGGGGT AGCCATAGGT GCCAGTTGGT ATAACCGTGA CTTTGGCTCA
GACAACGTCG AAACCGGCGG TAAATGGGAA TTTGCCGGGG ATAACGGCTT TGAGGATGCG
GCGCTTGAAT CCGTCGATGC ACGGGATTAT GAAATCAATC GTGAACGTTT AGGCATAGGG
GTGAACTTCG ATTATCGCCC GAGCGATGAT ACCGATCTGT ATCTGCGCAC CCTTTACAGT
GAGTTTGATG ATACCGAAAC CCGCAACAGC GCTAAAACCA AGTGGAAATC GCCGCAGCAA
GAAAATGCCC TCAGCCAAGG CAAAACCACC CGCTCGCTAA AATCACGCAC CGAGAACCAA
AACATCACCT CCTTTGTGCT GGGCGGTCAA ACCCGCTTCG AACGCTGGAC CTTTGACTAT
CAAGCAAGCC ACAGCACCGC CAGCGCCGAC AAACCGCGGG ATATTGCCGG CGCCAACTTT
GTCGCCAAGA TTGATAACAC GGGTTTTAGC AATACCAATC AGCCACAGAT AATCGCCCCC
GAAGACTATT ACCAAAACGA CAATTTTGAA TTAGATGAAA TTGAAGTTGC CGCCTCCAAG
GCCGAAGACA CCATCAACAG TGGCCAACTG GATCTCACCC GCCAGTTAAC CATTGCGGAT
TACAGCGTCG AGCTAAAAAC TGGGGTCAAG CTGAGCCGCC GCGATAAATC CAATCGCGAA
GATATTTGGA TCTACAGCGA CTTAGGCGAT CAAGGCGTGA GCGATGAAGA CTTGTTATTG
AGTCAATACG CAGGCAATGA GCTTGACTAT GACCTCGGCC GCTTTGGCAG CGGCATCAAT
GCTGCGCCGC TATGGCAGCT TATCGACAGC CTCGATGCCG ACAGCAATCG CGATGATATC
GAGTCCACCA TTAACGATTT TGATATCAGC GAAGATATCA ACGCCGCCTA CCTGATGGGC
CACATCGATA TCGAGAAACT GCGTATCTTA ACTGGGCTGC GTTTTGAGCA AAATCAATGG
GATTCTAGCG GGTACGGTTA CGATGGTGCC AAGGGCGAGT TTATCGATAT CAAGCATTCC
CGCGATGAAG ATCATTGGCT GCCCGCACTG CACCTCACTT ACCGCTATAG CGACAATACC
GTGCTGCGCG CCGCTTGGAC CAACACCTTA GTGCGCCCAA CATTCGGCCA ATTAGCGCCG
GGATATTTGC TCGAAGAGGA TGATGGCGAT ATCGACTTAA CCTTTGGTAA TCCACAACTT
AAGTCGCTCG AATCGATGAA CTTTGACTTA AGCCTCGAGC ACTATTTTGG CAATATCGGC
TTAATTTCGG CGGGGCTGTT TTATAAAGAT ATCGACAACT TTATCTATCA GGCAGATTTA
GCTGGTCGTG GCGATTATAT CGATGCCCAC AGCGCCGTGA CCTTTGTCAA TGGCGACAGT
GCCGACATCT ACGGCGTGGA GCTCAGCTAT GTGCAAGAGT TTAACTTTTT GCCCGAGCCC
TTTAATGCGC TGGTGCTCAA CTCTAACCTC ACCTACACAG ATTCCAGTGC TCAGATCAGT
TGGCTGGAGG ATGGCCAATT ACTGAGCCGC GATATTCCCA TGCCAAGCCA ATCGGATCTC
ACCGCAAACC TGTCCCTTGG CTATGAAAAC AGCTACGCCA GTGTTTGGTT ATCGGCGGCC
TATAAATCCG AATATTTACA GGAAGTCACA GAGCTCAGTG ATGAGCGCTA CGATCTCTAT
CAAGACAATC ATTTGCAGTG GGACTTTGTC GCCAAGGCCC ATTTAACCAG CAATTTAACC
TTGTATTTCA AAGGGGTGAA CCTGACCGAC GAGCCCTACT ACAGCTACAC GGGTGACAGC
AGCTATAACG CCCAATACGA AGCCTATGGC CGCACTTTCC AGTTAGGCGT GCAGTACACC
AACTATTAA
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| Protein sequence | MQSPIARQLG SLIPQQAHPV ARVHKRLTSR LSALSLAMVL AGLSHNALAI GKLEGQIRDN
SSQQPLAGAT VTLKELNLSQ QAGRDGRFFF VGVQDGDYTL VVNYLGAMPN EHRISIRDKQ
TTLQDINLSS QDDVEHIRVV GQQGALSKSM NRQRGADNVL SVVSADVLGN FPDSNISESL
QRVPGLSIER DQGEGRFVRV RGMAPDYNSV SMNGTRLPSP ESDRRAVALD VVPSDLLQSV
EVSKTLTPDM DADALGGAIE VKSLSAFDRD DTYLNLNAEA SQDTLTDNTN PKLAASYSDI
FADKLGVAIG ASWYNRDFGS DNVETGGKWE FAGDNGFEDA ALESVDARDY EINRERLGIG
VNFDYRPSDD TDLYLRTLYS EFDDTETRNS AKTKWKSPQQ ENALSQGKTT RSLKSRTENQ
NITSFVLGGQ TRFERWTFDY QASHSTASAD KPRDIAGANF VAKIDNTGFS NTNQPQIIAP
EDYYQNDNFE LDEIEVAASK AEDTINSGQL DLTRQLTIAD YSVELKTGVK LSRRDKSNRE
DIWIYSDLGD QGVSDEDLLL SQYAGNELDY DLGRFGSGIN AAPLWQLIDS LDADSNRDDI
ESTINDFDIS EDINAAYLMG HIDIEKLRIL TGLRFEQNQW DSSGYGYDGA KGEFIDIKHS
RDEDHWLPAL HLTYRYSDNT VLRAAWTNTL VRPTFGQLAP GYLLEEDDGD IDLTFGNPQL
KSLESMNFDL SLEHYFGNIG LISAGLFYKD IDNFIYQADL AGRGDYIDAH SAVTFVNGDS
ADIYGVELSY VQEFNFLPEP FNALVLNSNL TYTDSSAQIS WLEDGQLLSR DIPMPSQSDL
TANLSLGYEN SYASVWLSAA YKSEYLQEVT ELSDERYDLY QDNHLQWDFV AKAHLTSNLT
LYFKGVNLTD EPYYSYTGDS SYNAQYEAYG RTFQLGVQYT NY
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