Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_3439 |
Symbol | |
ID | 4476782 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | + |
Start bp | 4121231 |
End bp | 4122142 |
Gene Length | 912 bp |
Protein Length | 303 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 639728048 |
Product | LysR family transcriptional regulator |
Protein accession | YP_871068 |
Protein GI | 117921876 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0327434 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.240925 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCAGATT TAAACGGTAT GATGCTATTT GCAGCCGTAG TTAGAGCGAA GGGATTCTCC CAAGCTGCAC GTGAAACCGG CCACCCAAAA TCCACCATAA GTCGCAAAAT CGCGCAGCTC GAAGAAGAAC TTGGCGTGCG ATTATTACAA CGCGACACCC GCAACTTAAG CCTTACTCAA GTCGGGGCCC TCTTTTATCA ACACTGTGAT TCCATTCGCA ATGAGGTGGA AGCGGCCAAG GCTGTTATCG AGAGTACCCA TGATGATGTG TCAGGATCAT TACGGATAGC TATTCCAGTC TCTTTTAGCC AAGAATTAAT CGCTAACCTC TGTAGCGGAT TCATGCGTTT ATATCCCAAT GTGGAATTAG ATGTCCAGTT TACCGACAAC GATATCGGTT TAGTGGGTGA AGGATATGAC ATAGCTATCA AATATGGGCC ACTGCAATCC TCTGATCTTG TTGCAAGATT ACTGTTCGAG CGCCAACCCA TTCTCGTGGC AAGCCCGGCT TATTTAAAAG CCCGAGGCAC GCCTGCTACA CCCAAGGAAT TAAGTGAACA CAGTGGTATC TTACTCGGGA CATCACGCTC TGCGCCCATT TGGCCACTGG GTAAAGGCGC GCGTAAGACC ATGGTGAATT TTCAACGTAA GGTTAGGGTT AATAGCCCTA TTATGGTCAA GCAGTTAGCC CTCGATGACT TTGGCATTGC CATGCTGTCC AACTCCGCCT GCAAGACGGA ATTAGCGAAT GGTCAACTGG TTCCCATACT ACAAGAATGG CCAATCGAAC CCTTTAAAGT CTATGGGGTA TATTCCAGCC GTCGCCAATT AGCCACTAAT ATTAGTGCCT TCTTGGACTT TTTCGTCAAA CGCTTTAGTA GCCAAGAAAG CCTGCAATCC TTGATGGGCT AA
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Protein sequence | MPDLNGMMLF AAVVRAKGFS QAARETGHPK STISRKIAQL EEELGVRLLQ RDTRNLSLTQ VGALFYQHCD SIRNEVEAAK AVIESTHDDV SGSLRIAIPV SFSQELIANL CSGFMRLYPN VELDVQFTDN DIGLVGEGYD IAIKYGPLQS SDLVARLLFE RQPILVASPA YLKARGTPAT PKELSEHSGI LLGTSRSAPI WPLGKGARKT MVNFQRKVRV NSPIMVKQLA LDDFGIAMLS NSACKTELAN GQLVPILQEW PIEPFKVYGV YSSRRQLATN ISAFLDFFVK RFSSQESLQS LMG
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