Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_2314 |
Symbol | |
ID | 4478071 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | + |
Start bp | 2785613 |
End bp | 2787742 |
Gene Length | 2130 bp |
Protein Length | 709 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 639726909 |
Product | alpha amylase, catalytic region |
Protein accession | YP_869949 |
Protein GI | 117920757 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0366] Glycosidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.169067 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGAATTTTC TATTATCTAA CAACAGCAAA CGTGGCACTT ATCGCTGGCA TCAGGGATTA ACCCTACTGG CACTCAGCAG CATTAGCACC TTTAACGCCA TGGCCGCTCA AGCAATCACT ACTCAAGCAA CGGCGTTACA GGCAGTAGCG GCTAAAACTA TGGCTGCCAA TCCAAATGTA GGCGAAGGCG AAATGCTGCC AGCCCATCAC CATGGCGAGC AAGCAAATAA GTTTAAACCC GTTGTTTATC AAATTTTTAC CCGACTCTAT GGCAATAAAA ACACCACCAA TAAACCTTGG GGCACGATTA GCGAAAACGG TGTGGGTAAA TTTAATGATA TTGATGATAC TGCACTCAAA AGTATCAAAG ACTTAGGTGT TACCCATGTG TGGTATACGG GTGTACCCCA CCACGCCCTA ATTGGCGATT ACAGTGCTAT TGGCGTAAGT CACGATGATC CCGATGTGGT TAAGGGCCGC GCTGGCTCGC CCTATGCGGT TAAAGATTAT TACAACGTAA ACCCCGATTT AGCGGTCGAT CCCGCAAAGC GTTTACAGGA GTTTCAGGCA CTTATCGAGC GCACCCACAA GCAAGGCTTA AAGGTGATTA TCGATATAGT GCCCAACCAT GTGGCGCGTA ATTACCATTC CATCACTAAG CCCGAGGGTG TGCACGATTT TGGTGAAGAT GATAATCAAA CCCTTGAATA TGCAAAGCAT AATAACTTTT ACTATGTGAT TGATAAAAAG CAATCCTCAG GCTTTCAAGT GCCCGATTTG CCTGAGAGCC TCAAACCGTT AGGCGGTGAA TCGCATCCCC TAAGTGATGG TCAATTTAAG GAAATCCCCG CCAAATGGAC GGGCAATGGC TCACGCCTTG CTAAGCCGGA TATGAACGAC TGGTATGAAA CCGTTAAAAT CAATTACGGT GTCCGCCCCG ATGGCAGCCA TGATTTCCCC GCACTGCCAC CAGGTTATGC CACTCTCGGC GCCGAGCAGC ACTACGCATT TTGGCAGCAA CATAGTCATG AATTGCCTAA CTCTTGGATC AAATTCAATC AAATTGCCCA GTATTGGTTA GCGATGGGAG TCGATGGATT TCGTTACGAT ATGGCCGAAA TGGTACCAGT CGAGTTTTGG AGCTATTTAA ATAGTCATAT AAAACATAGC CATCACGAAG CTTTTATCTT AGCTGAGGTC TATAACCCCG CACTGTATCG CGACTATATT CAGCTCGGCA AAATGGACTA CCTCTACGAC AAGGTCGATC TTTACGACAC CCTCAAAGCC ATTATGGCAG GGCAAAAAAG TACCGCGCAG ATCGCCGCGG ATCAGGCCAA AGTACATGAT ATCGACACGC ATATGCTGCA TTTTTTAGAA AACCACGACG AGCAGCGCAT CGCCAATGCC GCCTTTTTAG GTAGTTTAAG TGGTAATGCC TCTACGGATG CGGTCGATCC CCGCTACGCC CTGCCCGCAA TGGTGGTGTC AGCAACCTTA AGTACCTCAC CCACCTTGAT TTATTTTGGT CAAGAAGTAG GAGAAGCGGC GACGCAAAAC CTAGGCTTTG GCCATGCTTC GCGCACCAGT ATTTTTGATT ATGCGGGTGT TCCCGCCCAT CAGCGCTGGA TGAATCAAGG TAAATTTGAT GGCGGCCAAT CAACCACGGC AGAAGTCGCG CTGCGCACCT ACTATCAAAA ATTATTGAAC CTCAGCACAG GGAAAAATGC GCCCGCGCTC TTAGGACAAT ATGACTCGCT AGATGCTGCT AACCGCAGCG CGGTATCGGC CGCAAAGGCT AGCAATAAGG CTAACAATAA GACAAACAAT GGCAGCGCAA CGGGTTATGA TGACTCAACC TTCGCCTTTG TCCGCTTTGA GGCTAATACC GCCAATAACA AAGGTCAAAA GCTGATTATT GTCAGTAACT TTAGTCAAAC CCAAGCCAAG TTATTTTCAC TTAAACTGCC CCAATCTCTG ATTGCGCAAT GGCGGTTAAC CGATGCCACC TATCCGCTTA AGGATTTGCT GGAAGACCAT GAGGCGCAGT TGGTTGTCGA ACAAGGCGAA GGACAAGTTA AATTGCAGCT AGCGCCTCTC TCCACAGCCA TTTTTGAACT CGCCCATTAG
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Protein sequence | MNFLLSNNSK RGTYRWHQGL TLLALSSIST FNAMAAQAIT TQATALQAVA AKTMAANPNV GEGEMLPAHH HGEQANKFKP VVYQIFTRLY GNKNTTNKPW GTISENGVGK FNDIDDTALK SIKDLGVTHV WYTGVPHHAL IGDYSAIGVS HDDPDVVKGR AGSPYAVKDY YNVNPDLAVD PAKRLQEFQA LIERTHKQGL KVIIDIVPNH VARNYHSITK PEGVHDFGED DNQTLEYAKH NNFYYVIDKK QSSGFQVPDL PESLKPLGGE SHPLSDGQFK EIPAKWTGNG SRLAKPDMND WYETVKINYG VRPDGSHDFP ALPPGYATLG AEQHYAFWQQ HSHELPNSWI KFNQIAQYWL AMGVDGFRYD MAEMVPVEFW SYLNSHIKHS HHEAFILAEV YNPALYRDYI QLGKMDYLYD KVDLYDTLKA IMAGQKSTAQ IAADQAKVHD IDTHMLHFLE NHDEQRIANA AFLGSLSGNA STDAVDPRYA LPAMVVSATL STSPTLIYFG QEVGEAATQN LGFGHASRTS IFDYAGVPAH QRWMNQGKFD GGQSTTAEVA LRTYYQKLLN LSTGKNAPAL LGQYDSLDAA NRSAVSAAKA SNKANNKTNN GSATGYDDST FAFVRFEANT ANNKGQKLII VSNFSQTQAK LFSLKLPQSL IAQWRLTDAT YPLKDLLEDH EAQLVVEQGE GQVKLQLAPL STAIFELAH
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