| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3797 |
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| Symbol | |
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| ID | 4924188 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4517989 |
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| End bp | 4519119 |
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| Gene Length | 1131 bp |
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| Protein Length | 376 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640165423 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001095922 |
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| Protein GI | 127514725 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGTACGT CAGCCAAAAT TATCGCGATT TCCCTTCCAA TTCTACTCGC TGCCTGTTCG
CAGCAAGCCG AAGTCGACGG GGAGTTCACC GAACAACCTA AGGTCACAGT TCAGGTTATG
CAACCTCAGC TGATCCAACT CACCGAACAG TTCATGGGTA AGACCCAGGC GGTCGATCAG
GTGGAGATCT TGCCAAAGAT CTCCGGTTAC CTGATCAGCC AGGTCTATAC CGATGGCGCC
CACGTTAAGA AGGGTGATCT GCTGTTCGAG ATCGACCCTA AGCCGTTTCA GGCCGAGGTC
GCCCGCCTAG AGGCTAACCT GGCGCAGAAG ACGGCGCAGA TGATGCTACA GGCGAAGAAA
CATGAGAAGG CCCAGGCGCT GCTGACGCAA GATGCCCTGA GCAGCCTGGA GGTCGAGCAG
ATTGAGGCCG AGCTACTCGG CATGAAGGCC GAGGTGCAGA GCGCCAAGGC TGAGCTCAAC
TATGCTCAGC TGGATCTGGA AAACACCCAT ATTTACGCGC CTTTTAACGG CATCATGAGC
GACAGCCGCG TGAGTGTCGG CGCCCTGGTT GGCCCAGATG CCGAGCCACT CACCACTCTG
GTGAGCAGCG ACGCCATGCA TGTAGACATC AAGCTGGACG AGAAGCAGTA TCTCAACGAT
CTGCAGAAGC GCGTGCAGGC GGGCGAGGAG ATAGCGTCGC CCGAGATGGC GCTGACACTG
GCCAACGGCA CCCTGTACAA CCATAAGGGT GAGGTCGACT TCATCGACAA CCATGTGGAC
AGCCGCAGCG GTTCTATCCG TTTTCGCGTG ACCTTCCCTA ACCCAGAAGG CCTGCTGGTG
CCTGGTCAAT TCGTCTCCGT GTCCTCGCGC GAGCAGGTGG CCCAGCAACA GCTGGTGGTG
CCTCAAGCCG TGGTGCAGGA AGATCAGGGC GGTCGCTACG TGTTGACCGT TAACCAGGAC
AATGTGGTCG AGGCTCGTTA CGTCAAACTG GGTCTGCGTC AGGCCAATAC CTGGATAGTG
CAGGATGGCC TGCAAGCCGG TGAGCGCGTG ATTCTCAGTG GTCTACAGTC GGTGCGTGCC
GGCGTCGAAG TCGACGTGCA GCAGCCAGTC GCCCTAGCTA AGAAGGGGTA A
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| Protein sequence | MGTSAKIIAI SLPILLAACS QQAEVDGEFT EQPKVTVQVM QPQLIQLTEQ FMGKTQAVDQ
VEILPKISGY LISQVYTDGA HVKKGDLLFE IDPKPFQAEV ARLEANLAQK TAQMMLQAKK
HEKAQALLTQ DALSSLEVEQ IEAELLGMKA EVQSAKAELN YAQLDLENTH IYAPFNGIMS
DSRVSVGALV GPDAEPLTTL VSSDAMHVDI KLDEKQYLND LQKRVQAGEE IASPEMALTL
ANGTLYNHKG EVDFIDNHVD SRSGSIRFRV TFPNPEGLLV PGQFVSVSSR EQVAQQQLVV
PQAVVQEDQG GRYVLTVNQD NVVEARYVKL GLRQANTWIV QDGLQAGERV ILSGLQSVRA
GVEVDVQQPV ALAKKG
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