Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3355 |
Symbol | |
ID | 4922196 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 4001107 |
End bp | 4002327 |
Gene Length | 1221 bp |
Protein Length | 406 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640164967 |
Product | hypothetical protein |
Protein accession | YP_001095480 |
Protein GI | 127514283 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00000520077 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.000269034 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATTCGCT ATACCCTTGC GGCCAGTTGT ATTGCGCTGG CGCTGAGCGC TAACGCAGGT GCCACCACAG TAGACGAGGA GCTTAAGGCG CTCAAGGCGC GTATCGAGCA GCTGGAGGCC GAAAAGGAGC AGGCACCCGA AGCAAAGGAG ATGGACAAGT CGATCAAGTT TGGCGGCGCG GCCCGTTTCC AGTATTCCTA TGAGGACTAT TCCGATGCCA ACGCCGATCG CGGTGGCGAC TTCGACTTCG ATCTCTTCCG TATCGATGTG AACGGTAATC TGGATGATGT TATCTTCTCC GCTCAGTACC GTTGGTTCGA GTATATGAAC GTGGTTCATC ACGCCTGGGT GGGTTACAAC TTCGACGATG AGCAGCAGGG TAAGATAGGG GTGACTCAGG TGCCTTTCGG TATCCTGACC TACGCCTCCA ACAACTACTT CTTCAGCTCA AACTTCTATC TAGGCCTGGA AGACGACTAT GATCTGGGCC TGAACTACAC CTATAAGAGT GACGCTAACC GACTGGATCT GGCCTTCTAC AAGAATGACG AGCAGGGTGG CCTCGACGGT TATGTGTCGG ACCGCACCCA CAGATACGCC TATGACGTGG TCGGCGTTCG TCTGCCGGGC GAGGGGATCT ACGATGCGCC TACGGCTGGC TATGCCGCCG GTGAGAAGAA CACCTTCAAT GCCCGCTACA GCCATAATTT CGTGTTCGAT GAGGTGAGCC TTGAGCTAGG CGTGTCGGGC CAGCTGGGTC AGCTTGAGAT CGAGAACGGC ACAGATGGCG ATCAGGTCGC GGCGGCGCTG CACGGCGTGG TCAATTATGA TCGCTGGAAC CTCAAGTTGC AGCTCACCGA CTACAAGTAT GATGTCGATG GTATAGATGT GGAGCGCATG GTGGTGGCCG CCTATGCCTT TTATGACTCG ATCCCCGCCG AGGCGACCAG CTATGTGGCG GACTTAGCCT ATAGCCTGCC GGTGGCCTGG GGGCCTGTGT CAAACCTGAC CTTCTATAAC GACTACTCCT TGGTTACCGA CAAGCCTGGC GGGCAGAAAG ACACCTTCAT GAATGTGACC GGAGTGGCGG TCACCGCAGG TGGCCTCTAT ACCTATTTCG ATTTCGTGGT GGCCGAGAAC CAGCCCTTCA TCGGCGGCTC TATGGTGGGC GATGGCGGTA CCAACAAGCG CTTTAACATC AACTTCGGCT ACTACTTCTA G
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Protein sequence | MIRYTLAASC IALALSANAG ATTVDEELKA LKARIEQLEA EKEQAPEAKE MDKSIKFGGA ARFQYSYEDY SDANADRGGD FDFDLFRIDV NGNLDDVIFS AQYRWFEYMN VVHHAWVGYN FDDEQQGKIG VTQVPFGILT YASNNYFFSS NFYLGLEDDY DLGLNYTYKS DANRLDLAFY KNDEQGGLDG YVSDRTHRYA YDVVGVRLPG EGIYDAPTAG YAAGEKNTFN ARYSHNFVFD EVSLELGVSG QLGQLEIENG TDGDQVAAAL HGVVNYDRWN LKLQLTDYKY DVDGIDVERM VVAAYAFYDS IPAEATSYVA DLAYSLPVAW GPVSNLTFYN DYSLVTDKPG GQKDTFMNVT GVAVTAGGLY TYFDFVVAEN QPFIGGSMVG DGGTNKRFNI NFGYYF
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