Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2753 |
Symbol | |
ID | 4922920 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 3255170 |
End bp | 3257326 |
Gene Length | 2157 bp |
Protein Length | 718 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640164348 |
Product | TPR repeat-containing protein |
Protein accession | YP_001094878 |
Protein GI | 127513681 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0197782 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCGTAT TTCTCTACAG TCTGCTGCTG TTCTTTTGCT GTGCGACCTC GGTCAATGCA GCCTTCAGCC AATTGATCAG CAAAGAGGTT AAGTTTAAAG AGTCGGCCCC CGAGTTTTAC CAAGACGCCA TCGCCAGCCT CTCCTTCCCC ATCGAATTTG CCAGCGAAGT GGAATTCAAC CACCTCGCCG ATACCCAAGG CTTCAGTAGC CAGGAGCTGG AGCAGCAGCT ACAGTGGCTG GCCCGTGTCT ACCTGGAGCC GGGCATTGGG GTCGATGACG CCATGGAGAA GGCGCAGCAG GTGATGACCC AACTTGAGAT CATCGCCGAC ACTCCCTACG ACAGGGCTTA CTTGCTGATG CTCCAGGGAC GCAAGACAGG CCGAGATAAG CAAGATTACC AGCTGGCGAT CACTTACTAT CAACAGGCGC TGGCTCAGCT CAAGGCCAGC GAAGATCTGC CGACTCAGCT GCTGCTACAC AACATTCATT ATCAGCTTGG CGACCTCTAT CGCATCACGC TACAGAAGAA CGCCGCCCTC ACCCACCTCA ACCAATATCG CGAGCTGGCC TATCAGCTTA GAGACGACTA CCTGATCGCC AAGGCCGAGT CGACACTGGG GCACTACTAC AGCGGCGATG AGCAATTTGC CAAGGCGCTG CAACATTATA CCGAGGCGAT CCGCCTGGCC GAGGGACTGG ACAAGCCCTT CCTCAACGCC ATCTTGTCGC TGCGCCTCGC CCGCGTCTAT CGGGATCTCA AGTCTTGGGA TGAAGCCCTG ACCTACGCCC ACAAGGCCGC CGATGGTTTT ACCAAGGTGG GTAAAGACAA TTATCTGTCT AGCGCCATGA CGGTGATCGC CATGGTGTAT GGTGAACAGG AGCGCTGGAA TCAGGCGATC GATTACTACC TCAATGCCCA GCAGATAGAT GTCAGACGCG GTAACCTGAC CGCCCAGGCC CTTAACCTGC ACAACCTGGG CGAAGCCTAT TTCAACAACA AGGAACCCAA GCGCGCCCTG ACTAACCTTA TCAAGGCTAA CGGTTTGTTC CTGCAGAAGA AGAGCAAGCA CTACCTGATC TATAACGATC TGCTGATCGC CCAAGTAGCC AGCCAACTCG GCGACTGGAG CATGGTCAAC GCCTATGCCG CCAAGGCCTT CGTATTGGCC CGGGAGAAGA AACTGCCGGA GCAGATGTTT GAGGCGCTGC AATATAAGAC CCGCGCCCTG AAGGAACTGG GCGACATCGA CAAGGCCCTA GCGGCGCTGG AACAGCTTAT CGCCCTGAGT CAGGACCTCG AACACGAGAG CCAGAAGCCC TCAGACTATA GCCCGAGTGT GTTGGCCGAG CAGCAGCTTA AGCTGCAGCT CAGTCAGCTG CAGGCATCAA ACAAGACACA AGAGAAGCAG GCCCATCAGT TCAGGCTGGC CGCCAGCATC ATCTTTATCG TGAGTATGCT GCTGGCACTG GCCGGCATCA ACCAGTGGCG CGGTAAGAGT AAGTTGAAAA GGCAACTGGC AAGCCTAAAA CAGAAAGTAA ATCAGGAACC CATTACCCAG CTGCCTGGCT ATCACGGTTT CATCGCCCGC ATGCGACAGA AAAATGAGAT TGCCCAGCTG GCGCTGCTCT CTCTCGATGA CGGCCACACG CTGGATCTCA ACCTGGGCAA CGATACCTAT CTCGAGGCCA CCGCGCGTCT GATGGACACC CTGAGTCGAG GCCTAGCCGG AGAGGCTTAT CTTATTCGTC CGGGCCTCAT CCTGCTGACG CTTAACGAGG TAAACGCCCA TCAAGCACTG CAGGAGCGGA TCCGCAGCTT GCTCGATGAC CAGCCACAGA GTCAGGGCAC TCATTTCAAG CTGGGCTGCA TCAAGGTGCC GCTACTTGGT AATCCGGACA TCAAGGTGAC GCCGGATACT TACTTCAATG TGCTGCAGAT GTTGGTGGCA GGCGCCATGA GTCTGGGGAC GCAAAAAGAT TGTTATGTCA GTATCACACC ACTGAATTTT GCACCGGCAG CAATTTTGTC TAACCCGCTA TACTTACACT TGGAAAAAGG GATCAGCCGA GGATTGGTAA AGGTCGAATG TAATGAGAAT AAGGCACTCA TCCAATGGCC CAAATGGCAG GGAGCAAACG ATGCAGACCC CACATAA
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Protein sequence | MRVFLYSLLL FFCCATSVNA AFSQLISKEV KFKESAPEFY QDAIASLSFP IEFASEVEFN HLADTQGFSS QELEQQLQWL ARVYLEPGIG VDDAMEKAQQ VMTQLEIIAD TPYDRAYLLM LQGRKTGRDK QDYQLAITYY QQALAQLKAS EDLPTQLLLH NIHYQLGDLY RITLQKNAAL THLNQYRELA YQLRDDYLIA KAESTLGHYY SGDEQFAKAL QHYTEAIRLA EGLDKPFLNA ILSLRLARVY RDLKSWDEAL TYAHKAADGF TKVGKDNYLS SAMTVIAMVY GEQERWNQAI DYYLNAQQID VRRGNLTAQA LNLHNLGEAY FNNKEPKRAL TNLIKANGLF LQKKSKHYLI YNDLLIAQVA SQLGDWSMVN AYAAKAFVLA REKKLPEQMF EALQYKTRAL KELGDIDKAL AALEQLIALS QDLEHESQKP SDYSPSVLAE QQLKLQLSQL QASNKTQEKQ AHQFRLAASI IFIVSMLLAL AGINQWRGKS KLKRQLASLK QKVNQEPITQ LPGYHGFIAR MRQKNEIAQL ALLSLDDGHT LDLNLGNDTY LEATARLMDT LSRGLAGEAY LIRPGLILLT LNEVNAHQAL QERIRSLLDD QPQSQGTHFK LGCIKVPLLG NPDIKVTPDT YFNVLQMLVA GAMSLGTQKD CYVSITPLNF APAAILSNPL YLHLEKGISR GLVKVECNEN KALIQWPKWQ GANDADPT
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