| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1970 |
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| Symbol | |
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| ID | 4921402 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2276204 |
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| End bp | 2277934 |
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| Gene Length | 1731 bp |
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| Protein Length | 576 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640163539 |
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| Product | histidine kinase |
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| Protein accession | YP_001094095 |
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| Protein GI | 127512898 |
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| COG category | [P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG3221] ABC-type phosphate/phosphonate transport system, periplasmic component
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.12135 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGGCGCGC TTGCCTTTGC GGCACCCGAG ATAGTGTATC AGCGCTGGGC ACCTACCCTG
GCGAGGGTCA CAAAGGAGAC CGGCATTGAG CTGGAACTTG TCCCCCTCAG ACCTGATGAG
CTGGTTGAAC GTGTCTCCAA TAGCAGCCTA GATTTTATCA TAGGCAATGC ACTCATCACC
GTGGCCTTTA AGAAGGACTA TGGCGTCAGC CACCTGTTGA CTCTGGTACC GCTAAATCAT
GCTAATCCAG AGCAGGCCGT TGGCACAGCT CTGATTTCGA GAAGCTCACT GGAAATTAAT
ACCTTAAGCG ATCTTGAAGG CTTGAGAGTC GTTTCCTCAG ACCCAAACGC TTTTGGTGGT
TTTCAAATCA TAGCCGGAGA AATGATCACG GCGGGCATCG ATCCACTTAA CGATCTGAGA
CAACTTGAGT TTGTCGGCTT TCCACAGGAG AAATTACTCG ACTTTCTGCG AGAAGATCGC
GCCGATGTGG CCATACTCCC CAGCTGCGTG CTTGAATCCG CCATCGCCCA AGGCAAGTTG
ACCCGCGGTG AGTTGCATGT GCTTCTGCCG CAGTTTCATC CGGGCTTTAG CTGCCAAGCC
TCTAGCAGCC TTTATCCTGG CTATGCCTTC TCTAAATTAG GCAAGACAGA TCATGACGTC
GCGCGGCAAA TTGTGCGGGC CTTACTCGAC ATTGAGTCCC AAGATCAGCA GGCAATACTC
GGGCGTTATC ACACTTGGTC TGTGCCGGTT GACGATAGCC AGGTATTTAC CCTGCTCCAG
CAACTAGACC GTTGGCCCTT CGTCACCAAC TGGCAACGAT TGGCCGAGGA TGCGATCCCC
TGGGCCTTAG TGATAGCCAT CATCCTGGCA CTTGGCTACC TCCACCACCT TAGGGTTAAA
CGGCTGGTGA AGAAACGTAC CCAGGCGCTA AGTGATGAGA TGACACAACA TAAAAACACT
CAAAAGAGGC TATTCGAGCA GCAACAACAG TTCTATAGGG CGCAAAGAGT GCTGCTAACC
GGTGAGATGG CATCTGGCAT CGCCCATGAA TTGAATCAGC CGCTGGCGGG TATCCGATAT
CTGGCCCAAG GCAGTATCTA CCGGCTCTTA GCGCAGCAAA CTGAGCTGCA ACACGCTCTC
AGTAAGATAT TGCAACAGGT CGACCGTGCC CAAAACACCA TTAAACGCTT TCGCCAATTT
TGCCAGCAAC CCAGCGTCTA TCAAGACTGT GATCTAAAGG AGCTCATTCA AGATACGCTT
AATCTGATGC AACCTGATTT TAAGCGCATC GACTTTAACC CTAAGCTGTT TCTCTGGCCT
TTAACCGTGA CCCTGGATAT CAGCTTAATG CAGCAGGTGT TTGTTAACCT GATCCGCAAC
GCGTTAGATG CGATGGATGA GACTGACGAT CCGCAACTGG CGATAGCCAT AACTAACGAT
AGCGAGAATG CCGTGATAGT CGTGTCCGAC AGCGGCATCG GCCTGAGTGA ACAGGCATTA
GAGCGATTAT TTTTCCCCTT CGAGACCTCT AAGGCCAATG GTTTGGGGCT TGGTATGGTG
GTTTGCAAAC GGATAGTCGA AGAGCATGGC GGCAAGATCC GCGCCTTCAA CAACCACGAG
GCCTCGAGAA CTCAACACTT ACCTAAGGAA CTTGGCGATG AGTTTCCCAG ATTCGCCACA
GGGCTCACCT TAGTGATCAC TCTGCCTCTT AAGGAAAACG TACATGTGTA A
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| Protein sequence | MGALAFAAPE IVYQRWAPTL ARVTKETGIE LELVPLRPDE LVERVSNSSL DFIIGNALIT
VAFKKDYGVS HLLTLVPLNH ANPEQAVGTA LISRSSLEIN TLSDLEGLRV VSSDPNAFGG
FQIIAGEMIT AGIDPLNDLR QLEFVGFPQE KLLDFLREDR ADVAILPSCV LESAIAQGKL
TRGELHVLLP QFHPGFSCQA SSSLYPGYAF SKLGKTDHDV ARQIVRALLD IESQDQQAIL
GRYHTWSVPV DDSQVFTLLQ QLDRWPFVTN WQRLAEDAIP WALVIAIILA LGYLHHLRVK
RLVKKRTQAL SDEMTQHKNT QKRLFEQQQQ FYRAQRVLLT GEMASGIAHE LNQPLAGIRY
LAQGSIYRLL AQQTELQHAL SKILQQVDRA QNTIKRFRQF CQQPSVYQDC DLKELIQDTL
NLMQPDFKRI DFNPKLFLWP LTVTLDISLM QQVFVNLIRN ALDAMDETDD PQLAIAITND
SENAVIVVSD SGIGLSEQAL ERLFFPFETS KANGLGLGMV VCKRIVEEHG GKIRAFNNHE
ASRTQHLPKE LGDEFPRFAT GLTLVITLPL KENVHV
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