Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1889 |
Symbol | |
ID | 4921769 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 2178964 |
End bp | 2180589 |
Gene Length | 1626 bp |
Protein Length | 541 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640163457 |
Product | alpha amylase, catalytic region |
Protein accession | YP_001094014 |
Protein GI | 127512817 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0366] Glycosidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACCAAC TCTCCTGGTG GCGCGGCGCC GTCATCTATC AGATCTATCC TCGCAGCTTA ATGGATTCCA ATGGCGACGG TGTAGGTGAT CTACAAGGCA TCATAAGTAA ACTCGACTAC ATTGCGAGTC TGAACGTGGA TGCCATCTGG ATCTCGCCTT TCTTCAAGTC GCCGATGAAA GACTTCGGTT ACGACATCAG TGACTACCGC GCTATCGATC CTTTGTTTGG CACCATGGCG GACTTCGACG AGCTGATCGA CAAGGCGCAC GGCCTCGGCA TCAAGGTGAT TATCGATCAG GTGCTCAGCC ACACCTCAGA TCAACACGCC TGGTTTAGCG AGAGCCGCCA GAGCCGGGAT AACGCCAAGC AGGACTGGTA TGTGTGGGCC GACCCTAATC CAGATGGCAC CGCGCCCAAC AACTGGCTGG CTATCTTCGG TGGCTGTGCC TGGGAGTGGG AGCCACGTCG TCAGCAATAT TATCTGCATA ACTTCCTGAC CAGTCAGCCG GATTTGAACT TCCATAACCC TGACGTGCGC CAAGCTGTGC TGGATAATGT TAAGTTCTGG CTCGACAAGG GAGTCGATGG TTTCCGCCTC GATGCGATCA CCTTCTGCTA TCACGACGAG CAGCTCAGAG ACAATCCGCC TAAGCCTGAA GACAAGCGTC AGGGCAGGGG CTTTAGCGAA GACAACCCTT ACGCCTATCA GTATCACTAC TATAACAACA CCCGCCCGCA GACTGTTGGT TTCATCGAAG AGCTGCGCGC GCTGATCAAC CAATATCCTG GCGTCGTCAC CCTAGGGGAA GTCTCTTCGG AAGACTCGCT GGCGACCATG GCCGAATATA CCCAGGGTGA CGATCGCCTG CATATGGCCT ACAGCTTCGA GCTGCTGACC GATGACTTTA GCCCGGCCTA TATTCGCCAC ACGGTAGAGG CGCTGGAGCA GAGCATTGGC GATGGCTGGC CCTGCTGGGC GATAGGCAAC CACGACGTGC AACGGGTCGC GACACGTTGG GGCAGAGACG CCTTCAATAG CGATATGGCC AAGATGCTCA ACGCTATGCT CTGTTCGCTA CGGGGCAGTG TCTGTAGCTA CCAAGGTGAG GAGTTGGGTC TTGGCGAGGT AGAGATCGCC TATGAGCAGC TGCAAGATCC GTTCGGCATC ACCTTCTGGC CTATGTTCAA GGGCCGTGAC GGTTGTCGCA CGCCTATGCC TTGGCGCCAT GATGCCAACC ATGCAGGCTT CAGTGACAAC ACGCCTTGGT TGCCGGTACC GGCCGATCAC AAAGCCGTGG CGGTCGATGT GCAGGAGGCC AACCCTGAGT CGATTCTGAA CCATTACCGT CACATGCTGG CCTGGCGTAA ACTGCACCCG ATACTCGTCA CAGGTGATAT CAAATTTATT GAATCAACCG ATGCACTTTT GGTGTTTGAG CGTCGTCTAG GCGAGCAGAC CCTGCTGGTT GCCTTTAACC TGAGTGGTCA GCCGCAGAGC TTTAGCCTGG CAGGTCTGGG CGACAAAGCG CTGTCGCCAC TGGAAGGCCA TGGTCTGCCT AAGGCCGAGC TGAAAGGCGA TCTGGTTCAG TTTGACGGTT TCGGTTGTTT CTATTGTTGG AAGTAA
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Protein sequence | MNQLSWWRGA VIYQIYPRSL MDSNGDGVGD LQGIISKLDY IASLNVDAIW ISPFFKSPMK DFGYDISDYR AIDPLFGTMA DFDELIDKAH GLGIKVIIDQ VLSHTSDQHA WFSESRQSRD NAKQDWYVWA DPNPDGTAPN NWLAIFGGCA WEWEPRRQQY YLHNFLTSQP DLNFHNPDVR QAVLDNVKFW LDKGVDGFRL DAITFCYHDE QLRDNPPKPE DKRQGRGFSE DNPYAYQYHY YNNTRPQTVG FIEELRALIN QYPGVVTLGE VSSEDSLATM AEYTQGDDRL HMAYSFELLT DDFSPAYIRH TVEALEQSIG DGWPCWAIGN HDVQRVATRW GRDAFNSDMA KMLNAMLCSL RGSVCSYQGE ELGLGEVEIA YEQLQDPFGI TFWPMFKGRD GCRTPMPWRH DANHAGFSDN TPWLPVPADH KAVAVDVQEA NPESILNHYR HMLAWRKLHP ILVTGDIKFI ESTDALLVFE RRLGEQTLLV AFNLSGQPQS FSLAGLGDKA LSPLEGHGLP KAELKGDLVQ FDGFGCFYCW K
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