| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0683 |
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| Symbol | |
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| ID | 4923185 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 777423 |
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| End bp | 778487 |
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| Gene Length | 1065 bp |
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| Protein Length | 354 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640162216 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_001092814 |
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| Protein GI | 127511617 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.346077 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTGCTG CGGAACAATC ATCACGGAAA ATGAGTTTTT ACATCATAGG CTTAATCTTA
GTCGTCTGGC TTTATAGCCT GTGGGCCGAC AGGGTAACGC CCATGACGAG CGATGCCAGG
GTGCATGCCT ATCTGGTAAG GGTGGCCTCA GAGGTCGCCG GTAACATCAC AGAGGTGAGC
GTCAGAGATA ACCAGATCGT CGAGGCCGGC GAGCCCCTGT TTCAGATCGA TCCGCGCAAC
TATCGTCTCG CCATGCAATC GGCTCAGGCC AATCTATCGT TGGCGGGGCA GAATATCGGT
GCCAGCACGG CGGCGGTAGA GGTGGCCCAG GCCAAGGTGG TAGATGCCAT CGCCGCGCGT
AACAACGCTA AGGAGCAGGC CGCGCGCGTC AGCGAGCTGG CCGGACAGGG GGTACTCAGC
CAGGCAGAGC TGGACAATGC CATCGAGGCC AGAGACAGAA CCCAGGCGAA TCTCGAAGCG
GCCGAGGCCT CGTTAGTGCA GGCCAGACAG GCCCTGGGCC CGGCAGGTCA GGACAATCCG
CAGATCCTCG CGGCCATGGC AAACCTGGAG AAGGCTCAGC TGGATCTGCA AAAGACTCAG
GTCAAGGCCC CTTCTAAGGG CGTAGTCACC AACCTTCAGC TCACCCTGGG ACAGCGCGCC
AACGTCGGCT CGCCCATGTT GACCTTTATC GATCCAAGGG GCGTGTGGAT CTCGGCCCTG
GTCAGAGAGA ACTCGCTGGA ACATATCAAG GTGGGCAACA AGGTGGAGAT AGTCCTCGAC
GCCCTGCCGG GACGAGTGCT AGAAGGCAAG GTCGACAGCA TAGGCTGGGG TACGGGCGGC
AGTAACAATA TCGACCAGAA TACAGGGTTT CTCACTGCAG ACAGCAATGG CATCAAGGCC
CAGCGCTACC CGGTCAACAT AGTCTTCACC GGCACCAAGC CGCCAGGAAA TATTCGCTAC
GGCTCTCAGG CCACAGTGGC CTTCTACACA GAGCAGAGCA GCATAGGCGA GTTCCTAGCC
GGCATCTGGA TGCAGATAGT GAGTATCTGG ACCTATGTTT CATAG
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| Protein sequence | MSAAEQSSRK MSFYIIGLIL VVWLYSLWAD RVTPMTSDAR VHAYLVRVAS EVAGNITEVS
VRDNQIVEAG EPLFQIDPRN YRLAMQSAQA NLSLAGQNIG ASTAAVEVAQ AKVVDAIAAR
NNAKEQAARV SELAGQGVLS QAELDNAIEA RDRTQANLEA AEASLVQARQ ALGPAGQDNP
QILAAMANLE KAQLDLQKTQ VKAPSKGVVT NLQLTLGQRA NVGSPMLTFI DPRGVWISAL
VRENSLEHIK VGNKVEIVLD ALPGRVLEGK VDSIGWGTGG SNNIDQNTGF LTADSNGIKA
QRYPVNIVFT GTKPPGNIRY GSQATVAFYT EQSSIGEFLA GIWMQIVSIW TYVS
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