Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0586 |
Symbol | |
ID | 4920568 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 663695 |
End bp | 664474 |
Gene Length | 780 bp |
Protein Length | 259 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640162119 |
Product | TPR repeat-containing protein |
Protein accession | YP_001092717 |
Protein GI | 127511520 |
COG category | [R] General function prediction only |
COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0440919 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.522989 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACAAAGC ATGTTTGGAA ATTGGCCGCA GGCCTACTGG CCCTGTTTGC CGTGCAGCAG CCTGCCCTGG CATTTTCTGT GCCCGCTACC GAAGCGGCGG CGCCTGCCAG TAAGTTGGCC CATATTCAGC TAAAAGCCAG CCAAGGCGAG TCTGAGGCGC AATTTCTTCT CGGTTTGATG TATCTCTCCG GCCGTTTCGT TAGCCCGGAT CCTCAGTTGG GTGCCAACTG GGTCGAACGC GCCGCCGAGA CCGGCCACAA GAAGGCGGCC CAGACCATAG CGGATCTGGC CTTCGACGGT AAGATCATTC CTCGTGACTT GGCCCTGGCC GAACGTTGGT ATCTGAGCCT GGCGAGCGAG CAGGACAAGT GGGCCCAATT CCGTTTAGGT TTCATCTATG CCGCCGGTGG TAATGGTGTG GCGCGCAACT GTGGTAAGGC GGTCGATAAC TTCATGGCGG TGGGCGATGA GATCTCCCTG GGCAACGTGG TGTGGATCCT CTCTACCTGT CCCGAGGCCA AGTATCGTGA CGGCGGTAAG GCCCTGGCCA TTGGCAAGGG GCTGGTCGAG GCCAACAAGC AAGACCCGAC TAACTTGGAT AATCTGGCGG CAGCCTATGC CGAGATTGGC GATTACAGCT CGGCGGTGGA TCTGCAGAAG CAGGCGATCA AGGCGCTCAA ACAGACGGCC GAGTTCGATA AGTCAGATGA ATTTGAATTA AGGCTGGAAA ACTATCGCCA GCAGAAGCCA TACCGTGAAG TGGTACCGCT GTCACAGTAG
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Protein sequence | MTKHVWKLAA GLLALFAVQQ PALAFSVPAT EAAAPASKLA HIQLKASQGE SEAQFLLGLM YLSGRFVSPD PQLGANWVER AAETGHKKAA QTIADLAFDG KIIPRDLALA ERWYLSLASE QDKWAQFRLG FIYAAGGNGV ARNCGKAVDN FMAVGDEISL GNVVWILSTC PEAKYRDGGK ALAIGKGLVE ANKQDPTNLD NLAAAYAEIG DYSSAVDLQK QAIKALKQTA EFDKSDEFEL RLENYRQQKP YREVVPLSQ
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