| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0572 |
|---|
| Symbol | |
|---|
| ID | 4921483 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 647975 |
|---|
| End bp | 648676 |
|---|
| Gene Length | 702 bp |
|---|
| Protein Length | 233 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640162105 |
|---|
| Product | cytochrome c1 |
|---|
| Protein accession | YP_001092703 |
|---|
| Protein GI | 127511506 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2857] Cytochrome c1 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00834423 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.355949 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAT TACTGATTGC ATTAGTTACA TTAGTACCAT CTCTTGCGTT TGCTGCAGGT
GGTGCCCATG TTCATCTAGA AAGTGCTAAC GTCGACCTGA AAGACAAAGA GTCACTGCAA
CGTGGTCTGG ATACTTTCCA GCACTACTGC TCAGGCTGTC ACAGCACTCA GTACCAGCGT
TACAACCGTG TAGCAGAAGA CCTGGGTATC TCAGTTGACG ATATGCGTAA CAAGTATATG
CTCAACGGCG ATGCCAAAGT CGGCGACCTG ATGGAAAATG CTATTCCTGA AGTCGACGCG
GCGAAATGGT TCGGTGCAGC GCCACCGGAT CTGACTCTGG TTGCACGTGT ACGTGGCGAA
GATTGGATCT ACACCTACCT GAAGAGTTTC TACAAAGATG AGACTCGTCC ATTTGGTGTA
AACAACACTG TCTTCCCGTC AGTGGCTATG CCGCACGTAC TGCAAGAGCT GCAAGGTCTG
CAGGTTAAGC AAGAAGACGG TAGCTTCGTT GCTACTGGTG GAAAGCTGAC TGCTGAAGAA
TATGATCAAG TCGTTCGTGA CATCACAGGC TTCCTGGTTT ACTCAGGCGA GCCGGTAAAA
CTTGAGCGTG AAAGCTTAGG TTGGTGGGTA ATGGGCTTCC TGTTTATTTT CTTTATTGTG
GCCTACCTCT TGAAGAAAGA GTACTGGAAA GATGTACACT AA
|
|---|
| Protein sequence | MKKLLIALVT LVPSLAFAAG GAHVHLESAN VDLKDKESLQ RGLDTFQHYC SGCHSTQYQR
YNRVAEDLGI SVDDMRNKYM LNGDAKVGDL MENAIPEVDA AKWFGAAPPD LTLVARVRGE
DWIYTYLKSF YKDETRPFGV NNTVFPSVAM PHVLQELQGL QVKQEDGSFV ATGGKLTAEE
YDQVVRDITG FLVYSGEPVK LERESLGWWV MGFLFIFFIV AYLLKKEYWK DVH
|
|---|
| |