| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0467 |
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| Symbol | |
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| ID | 4922146 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 524597 |
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| End bp | 525679 |
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| Gene Length | 1083 bp |
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| Protein Length | 360 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640161996 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001092598 |
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| Protein GI | 127511401 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.949455 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACCCC TTACAACGTC ACTTTCACTA CTCGTATTAA CTCTAGTACT TGCCGGCTGC
AGCACAGAAT CTGCCGAGAT CGCTCCCGAG AGTGTTCGTC CCGTTAAGCT GCTGGAGATC
ACCGAGTTGG GAAGCGGCAC CCTGAGAAGC TTCCCCGCCA AGGTCGCCGC CACCAAGCAG
GCGGAACTGT CGTTCAGATT ATCGGGTCAG CTGATCGAGT TCTCTCTAGT GGATGGCCAG
CGCGTCACCA AGGGCGAGGT GCTGGCGCGC CTCGACGACA GAGACGCTCG CAACCAATTG
CTCAACCGCG AGGCAGATCA TGAACTGGCC CAGGCCGACT TTAACCGTAA GGGCGAGCTG
CTGCGCCAGG CGCTGATCTC CCAGGCGGAA TATGACCTGG CCAAGGCCCA GCTGAAATCC
AGCGCCGCCA ACCTGGCCAG CGCCCAGGAT CAGCTGAGCT ATACGGTGAT CAAGGCGCCC
TTCAGCGGCA CGGTCGCCAA GACCAAGATA GAGAATTTTC AGATAGTACA GGCCAACCAG
CCGGTTCTGG TGCTGCAGAA AGATCGCTTC ATCGACGTAG TGATCCAGGT GCCCGAGTCG
CTGGCCAGCC GTGTGACCTC CTTTAACCCA CACTCGCCTT CACTGCCCAT GGTGACCTTT
AGCAATCACC CGGAGCAGCA GTATGCCGCG CGTCTCAAGG AGTTCGCCAC TCAGGTGACG
CCAGGCACCC AGAGCTACGA GGTGGTGTTT ACCCTGCCGA CCCCGACCGA ATTTAGCGTG
CTGCCGGGCA TGAGTGCCCA GCTGATCTTG GATATCGCCG GTCCCGATGC CAAAAAGAAG
AGCGCCATAG TGCCGCCGAG CGCCGTGCTC AAGCGAGATC AAGACGGTGA GCCTATCGTC
TGGACCTATG ATCTGGGCAC GGGCCAGGTG AGCGCCCGCA AGGTGAGCCT GGGTAAGGTG
ACCAGTCAGG GGATAGAGAT CACCCAGGGC CTGACGGTAG GTGACCGTGT GGTAGTCGCC
GGTGTGGCCC AGCTGCACGA GAGTCAGCAG GTCAAGCCGC TGCGCTGGCA ACGAGGTGTT
TAA
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| Protein sequence | MKPLTTSLSL LVLTLVLAGC STESAEIAPE SVRPVKLLEI TELGSGTLRS FPAKVAATKQ
AELSFRLSGQ LIEFSLVDGQ RVTKGEVLAR LDDRDARNQL LNREADHELA QADFNRKGEL
LRQALISQAE YDLAKAQLKS SAANLASAQD QLSYTVIKAP FSGTVAKTKI ENFQIVQANQ
PVLVLQKDRF IDVVIQVPES LASRVTSFNP HSPSLPMVTF SNHPEQQYAA RLKEFATQVT
PGTQSYEVVF TLPTPTEFSV LPGMSAQLIL DIAGPDAKKK SAIVPPSAVL KRDQDGEPIV
WTYDLGTGQV SARKVSLGKV TSQGIEITQG LTVGDRVVVA GVAQLHESQQ VKPLRWQRGV
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