| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0108 |
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| Symbol | |
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| ID | 4921203 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 118514 |
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| End bp | 119560 |
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| Gene Length | 1047 bp |
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| Protein Length | 348 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640161619 |
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| Product | polysaccharide deacetylase |
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| Protein accession | YP_001092239 |
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| Protein GI | 127511042 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTAGAA GCGTGATTGC GGCGCTATTG GCCTGTCTCA GTTATTCGGC TCATGCTGTG
GTGATTCTAC AATATCATCA TGTATCCGAG GATACCCCTA AGGTGACCAG TGTGATACCT
GCTCAGTTCA GAGAGCAGAT GAGCTACCTG AGGGAGAATG GCTTCAAGGT CAAGCCCTTG
ACTCACGTGG TCGAGGCGAT AAAGCAGGGA CGAGAGCTGG CGGACAAGAC GGTGGCAATC
ACCTTCGACG ATGGCTATCA GAACATTGCC GATACCGCTC ATCCTATCTT GAAGGAGTTC
GGCTATCCCT ACACCATCTT TATCTCCATC GACCCTATAG AGCGCAAGCA TAAGAATGTG
ATGAGTTGGG CGACCCTGAA ACGCCTGAGT GATGAGGGGG TAACCCTGGC CAACCATAGC
TGGGGCCATG AGCATCTTAT TCGCCGTCTA CACGGTGAAG ACGAACAGAC CTGGTTGACC
CGAATTACAG AAAATCTGCT CGCCACCGAG GCCGAGATAG AGGCGAAAAC CGGTCAGAGC
GTGAAGATGT TAGCCTATCC CTATGGCGAA TATAACACGG CCATAGAGAC GCTGGTGCAG
AAACTGGGCT TCGTGGGCTT CGGCCAGCAG TCTGGCGCTG CAGGCGGTTA TTCTTCGCTT
ACCGCCTTGC CGCGCTTCCC GGTGGCGGGT GCCTATGCGG ATCTCACCTC GCTCAAGGCC
AAGCTCTATA GCCTGAATAT GCCTGTGTTA GCGCTCACCC CGCGCAATAC CCAACTGCCC
CTGGGGCAGT GGCGGCCCGA GATGCAGGTG ACCTTAGATA TGGCAGATAT CGTCGCCAGC
CAAGTGATGT GCTTCGTTCA GGGGCAAGGC GCCATGAAGC CTAGCTGGGA GAGTGAAGAT
ACCTTCAGTA TACAGGCGGT GACAGACCTG CCGCCGGGGC GTTCGCGCTA CAACTGCACA
GCCCCAAGCA AGGCGAGCGG ACGCTATTAT TGGTTCTCCC AGGCCTGGGT GCGGCCAAAA
AACGACGGCA CCTGGGTGAA GGAGTAG
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| Protein sequence | MFRSVIAALL ACLSYSAHAV VILQYHHVSE DTPKVTSVIP AQFREQMSYL RENGFKVKPL
THVVEAIKQG RELADKTVAI TFDDGYQNIA DTAHPILKEF GYPYTIFISI DPIERKHKNV
MSWATLKRLS DEGVTLANHS WGHEHLIRRL HGEDEQTWLT RITENLLATE AEIEAKTGQS
VKMLAYPYGE YNTAIETLVQ KLGFVGFGQQ SGAAGGYSSL TALPRFPVAG AYADLTSLKA
KLYSLNMPVL ALTPRNTQLP LGQWRPEMQV TLDMADIVAS QVMCFVQGQG AMKPSWESED
TFSIQAVTDL PPGRSRYNCT APSKASGRYY WFSQAWVRPK NDGTWVKE
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