| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0045 |
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| Symbol | |
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| ID | 4921494 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 54917 |
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| End bp | 55987 |
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| Gene Length | 1071 bp |
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| Protein Length | 356 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640161557 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001092177 |
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| Protein GI | 127510980 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGATCCT TAATTGCCGC TGTGCTGGCG CTCTCTCTAA TCGGCCCCAC GAGCTGGGCC
CAGGGCGAGG CGCCCGAGCG TCTGGTGCAG GTGGTTCAGG TTGAGAACCG CGCCCTGTCG
CCCAAGATCA TGGTGATAGG ATCTGTGCAC TCCCGTAACT ATGCCGAGCT GACCGCGGGC
ATCGAGGGTA AGCTCGAGTG GGTGATCGAG GCCGGTACGC TAGTGAAGGC GGGTGAGGTG
GTCGCCCGCA TCGAGAAGAC TCGCCTTGAG TTGCAGAAGG CTCAGCAAGA GGCGCAGATA
GAGTATGAGA CTGTGGGGCT GTCTAGGCTT AATCGCGAGC TGAAGCGCTT GCAGAAGCTG
ATGGCTAATA AGAACGCCTC GGAGACCGAA TTGGATAAGG CGCGTTCGGA TCGCGACCTG
GCCGCCGCTA ACCTCAAGCT GGCACAGATC AAACTCGAGA TGATCCTCGA TGATATTGCC
CGCACCCAGG TGAAGGCGCC CTTTGCAGGC ATCATCACGG CGCGTCAACG TCAGGCGGGT
GAGGATATCA GCCGCGCCGA GTCAATCGTC GCCATCACAG ACCCGGACAA CCTGGAGATC
AGACTGCATG CGCCGCTCAA GCACAGTCGC CGGGTGAAGG TGGGGGATGA ACTGCGGGTC
TATCATGGCC TGGGGGAGTT CTCCGCTAAG ATCCGCAGCC TGATCCCCGT GTCTGATGTG
CGCTCCCAGA CCTTCGAGGC TCGCATCGAC CTACCACTCG AGCGGCAGGA TATGCTCAAC
GTCGGCGAGT TGGTCTCCCT GGCACTGCCA ATTGCTCCTA AACAGCTGAC CACCTTAGTG
CCCCGCGACG CCGTGGTGCT GCGCTCCGCC GGTGCCTTCG TGTTCAAGAT AGACGAGAGT
AACAAGGCGG TGAAGGTGGC CGTGGAGCTG GGCGATGGTG AAGGGGAGTG GATCGCCGTC
AAGGGTGAAC TCAGCGACAG CGACCAGGTG GTGATTCGCG GCGCCGAGAC GCTGCAAGAT
GGCCAGCAGG TGAAGGTGCA GGCCAATAAC CAGGAGCTGA GCGCCGGTTA A
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| Protein sequence | MRSLIAAVLA LSLIGPTSWA QGEAPERLVQ VVQVENRALS PKIMVIGSVH SRNYAELTAG
IEGKLEWVIE AGTLVKAGEV VARIEKTRLE LQKAQQEAQI EYETVGLSRL NRELKRLQKL
MANKNASETE LDKARSDRDL AAANLKLAQI KLEMILDDIA RTQVKAPFAG IITARQRQAG
EDISRAESIV AITDPDNLEI RLHAPLKHSR RVKVGDELRV YHGLGEFSAK IRSLIPVSDV
RSQTFEARID LPLERQDMLN VGELVSLALP IAPKQLTTLV PRDAVVLRSA GAFVFKIDES
NKAVKVAVEL GDGEGEWIAV KGELSDSDQV VIRGAETLQD GQQVKVQANN QELSAG
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