| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_17880 |
|---|
| Symbol | |
|---|
| ID | 8395678 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Slackia heliotrinireducens DSM 20476 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013165 |
|---|
| Strand | - |
|---|
| Start bp | 2019317 |
|---|
| End bp | 2020795 |
|---|
| Gene Length | 1479 bp |
|---|
| Protein Length | 492 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644986542 |
|---|
| Product | amino acid carrier protein |
|---|
| Protein accession | YP_003144156 |
|---|
| Protein GI | 257064484 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1115] Na+/alanine symporter |
|---|
| TIGRFAM ID | [TIGR00835] amino acid carrier protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAACGCAA CCCTGGTCGC CATCGACGAC GCGGTGTGGG GCATCCCGCT GATCTGCCTT
ATTCTGTTCG GCGGCATCTG GCTGACCATT CGCGTCCGCG GCCTGCAGTT CCACAAGCTG
GGCCGTGCGC TTCGCTACAT GGTGAAGAAC GAAAAGGACG GCAAGGGCGA GGTCACCAGC
TTCGGAGCCC TGTGCACGGC GCTTTCGGCC ACCATCGGCA CCGGCAACAT CGTCGGCGTG
GCCACGGCGG TCGTGGCCGG CGGTCCCGGC GCCCTGTTCT GGATGTGGAT TGCCGCGCTG
TTTGGCATGG CCACCAAGTT CTCCGAGGGT TTGCTGGCCG TCAAGTACCG CACCCATGAC
GCCGAGACCG GCCATGTGCT GGGCGGCCCG TTCTACTACA TCGAGCGCGG CATGGGTGCC
AATTGGAAGT GGCTGGCCAA GCTTTTCGCG TTCTTCGGCG TGTGCGTCGG CCTGTTCGGC
ATCGGCACGT TCACGCAGGT GAACAGCATT TCCGGTGCCA TCCTGTCGTT CTTCGACCCC
GACAAGCAGG CCATCGCCTT CTCGCTGTTC GGCCTTGATT ACTCCTGGGC GACGGTCCTC
GGCGGTCTGG CCTTGGCGTT CTTCGTCGCG CTGGTCGTCA TCGGCGGACT GAAGCGCATC
GCCTCTGTCG CCGAGCGCGT CATTCCCGCC ATGGTTGTCA TCTACCTGGC GCTTTCGCTG
CTGCTCATCG TCTGCAACAT CACGGCGGTT CCGGCCGCGT TCGCCGAGAT CTTCGCCGAC
GCCTTCGGGT TCCGCGCTGC TGCCGGCGGT GCCATGGGTG CCATCATCAT CGCCATGCAG
AAGGGCATCG CCCGCGGCAT CTTCTCCAAC GAGGCCGGCT TGGGTTCCGC CCCCATTGCC
GCTGCGGCCG CCCAGACCAA GGAACCTGTG CGTCAGGGTC TGGTGTCTAT GACCGGCACC
TTCCTGGACA CCATCATCGT GTGCTCCATG ACCGGTCTTG CCCTGGTCAT GTCCGGCGCC
TACATCGACC CGACGGCCGA GGGCGCGGCG CTTACCGTGC AGGCCTTCCA GATTGGCCTG
CCTTTCCTGC CCGAGGTGCT GGTGAGCTTC CTCATCATGC TGTGCATGGC CCTGTTCGGC
TTCACCACCA TCCTGGGCTG GGACTACTAC TCCGAGCGCT GCCTCGAGTA CCTGAGCGGT
GGCAACATGA AGGCCGTCAA GGTCTACCGC TGGCTGTACA TCCTAGCTGT GCTCATCGGC
CCCTACATGA CGGTTTCCGC CGTGTGGACC ATCGCTGACA TCTTCAACGG CCTGATGGCG
CTGCCCAATA TGATCGCCTT GATCGCCCTG TCCGGTGTGG TGGCTCGCGA GACTGCTGAC
TACCTGCGCC GTTTGAAGGA GGCGGGCGAC GACGAGGACG CCATGGAGCC CTACGTCAAC
GACCCTGCAA CATGGAAGAG CGGAGCCCCC GAGGCATAA
|
|---|
| Protein sequence | MNATLVAIDD AVWGIPLICL ILFGGIWLTI RVRGLQFHKL GRALRYMVKN EKDGKGEVTS
FGALCTALSA TIGTGNIVGV ATAVVAGGPG ALFWMWIAAL FGMATKFSEG LLAVKYRTHD
AETGHVLGGP FYYIERGMGA NWKWLAKLFA FFGVCVGLFG IGTFTQVNSI SGAILSFFDP
DKQAIAFSLF GLDYSWATVL GGLALAFFVA LVVIGGLKRI ASVAERVIPA MVVIYLALSL
LLIVCNITAV PAAFAEIFAD AFGFRAAAGG AMGAIIIAMQ KGIARGIFSN EAGLGSAPIA
AAAAQTKEPV RQGLVSMTGT FLDTIIVCSM TGLALVMSGA YIDPTAEGAA LTVQAFQIGL
PFLPEVLVSF LIMLCMALFG FTTILGWDYY SERCLEYLSG GNMKAVKVYR WLYILAVLIG
PYMTVSAVWT IADIFNGLMA LPNMIALIAL SGVVARETAD YLRRLKEAGD DEDAMEPYVN
DPATWKSGAP EA
|
|---|
| |