Gene Shel_11610 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_11610 
Symbol 
ID8395052 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp1337242 
End bp1338198 
Gene Length957 bp 
Protein Length318 aa 
Translation table11 
GC content65% 
IMG OID644985918 
Productporphobilinogen deaminase 
Protein accessionYP_003143544 
Protein GI257063872 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0181] Porphobilinogen deaminase 
TIGRFAM ID[TIGR00212] porphobilinogen deaminase 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCAGAAC GATTCGTTAT CGGCACCCGC GGAAGCAAGC TTGCTTTGTG GCAGACCGAA 
ACCGTGGGTC GTGCCATCAT GCGCGCGTTT CCCGAGATAG AGGTGGAAAT CCGCGTGCGC
AACACCACCG GCGACATCAA CCTTGCCTCG CCCTTGGCCG AAATCGGCGA CAAGGGCCTG
TTCACCCGCG AGCTGGAAAC CGACCTTTTG CTGGGCGAAG TGGACATGTG CGTCCATTCC
CTTAAAGACC TGGAGACCGA ACAGCCCGAG GGCTGCGTGG TGGCGGGCGT GCTGCCTCGC
GCCGACGCCC GCGACGTGCT GGTGTGCGGC CCGCGCATCC AGGCCGCAAG CTTGGCCGAG
GTGCCCGAAG GCAGCCGCAT CGGCACCGGG TCGCGCCGCC GCGTGGCCCA GCTGAAGGCC
AACTTCCCCA ACATGGTGCC CGAAGGCATC CGCGGCAACG TTGACACCCG CGTGGCCAAG
GCCGAAGGCG ACGATTACGA AGGCGCCATC CTGGCGGCCG CCGGCATGAA GCGCATGGGC
TACGAGGACC ACATCGCGGC GTACCTTCCC ATCGAAGACA TGATTCCCGC TCCTGGTCAG
GGCGCCATCG CTATGGAGGT CCTGAAGAAA AACGAGCGCG CCTATCAAAT AGCCCGCGCC
CTGAACGACC CCGTGACCAA GGCCTGCACC GATGCCGAAC GCTTCGTGCT GTTCTCGCTT
GAGGGCGGCT GCTCGGCCCC CATCGGCGCG CACTGCCGTC TTGAGGACGG AAAGTACATC
TTCGACGCCT GCGTGCTTTC GCTGGGCGGT ACCAAGGCGG CCCGCTGCCA CCTGGAGGCC
GACGCGGATT CCGCCGACCC CATGGACATG GCCTGGGAAG TTGTGAGCGA ACTTATCGGC
GAAGGTGCCC GCGCCATCCT GCGCGACATC AAGAACGGCA AGGACACCGG ACAATGA
 
Protein sequence
MPERFVIGTR GSKLALWQTE TVGRAIMRAF PEIEVEIRVR NTTGDINLAS PLAEIGDKGL 
FTRELETDLL LGEVDMCVHS LKDLETEQPE GCVVAGVLPR ADARDVLVCG PRIQAASLAE
VPEGSRIGTG SRRRVAQLKA NFPNMVPEGI RGNVDTRVAK AEGDDYEGAI LAAAGMKRMG
YEDHIAAYLP IEDMIPAPGQ GAIAMEVLKK NERAYQIARA LNDPVTKACT DAERFVLFSL
EGGCSAPIGA HCRLEDGKYI FDACVLSLGG TKAARCHLEA DADSADPMDM AWEVVSELIG
EGARAILRDI KNGKDTGQ