Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shel_10210 |
Symbol | |
ID | 8394912 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Slackia heliotrinireducens DSM 20476 |
Kingdom | Bacteria |
Replicon accession | NC_013165 |
Strand | + |
Start bp | 1163770 |
End bp | 1164849 |
Gene Length | 1080 bp |
Protein Length | 359 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 644985779 |
Product | 3-dehydroquinate synthase |
Protein accession | YP_003143405 |
Protein GI | 257063733 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0337] 3-dehydroquinate synthetase |
TIGRFAM ID | [TIGR01357] 3-dehydroquinate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0367242 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.000000704574 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGATCCGGA CGGACGGCAA CGGCAATTCG GTCGTACATG TGGCAACGGG CGAGCAATAC GACGTGACGA TTGGGAAGGG GCTCATCGGT CGGGTGGCAT CGTTTGTGCC CAGTTTGGAG AAGGTGTCCC GTGTGGCCGT CGTTACCGAC GATGTTGTGG AAGGGCTGTT TCTGGGCGAT GTGACGGACG GCCTGAAGCG TGCGGGGTTC GAGGTGTCGG CCTTCGCGTT TCCGGCAGGT GAGCCCAGCA AGAACATCCA TACCTTCGCA GCCGTGCTCG AGCATCTTGC GGAGCACCGT ATGACCCGAA ACGACATGGT GGTGGCCTTG GGCGGCGGCG TAGTCGGAGA CGTTGCGGGA TTCGCGGCGG CATCGTACAT GCGGGGCTGC CCCTACGTGC AGGTGCCCAC GACCATGCTG GCGGCCGTGG ATTCCAGCGT CGGCGGCAAG ACCGCCATCA ACCTGCAGGC GGGAAAGAAC CTCGCCGGCG CGTTCTACCA GCCGTCGGCC GTCGTATGCG ACATCGACTG CATCGCTGCG CTGCCATCGG GCGAATTCGC AAACGGCATG GCAGAGTCCC TCAAATACGG CGTGCTCTGC GACGCCGGTC TGTTCGACGA TCTGGGCGAC AATCCCCGCG ACCACTTGCA GGAGCTCATC GCACGCTGCG TGAACATCAA ACGACGCTAC GTGGAGGCCG ACGAGCATGA AGGCGGGCTG CGCAAGTTTT TGAACCTGGG GCACACCTTC GGCCATGCCA TTGAGAAATG CAGCGGATAC GCGGTGCCCC ACGGCAGTGC GGTTGCCATA GGCATGGTCA TGGCGGCGCG GGTGTCGGCA TCGCGCGTCA TGGCTGACCA GGCCTTGGTC GACCGGCTTG CACGCGCCCT TGAGTCGGCG GGCCTGCCGA CATCGACCGA CATTCCGGCT GAGGAGCTTG CCTGGGCCGC GCAATCGGAC AAGAAGCGTT CCGGCGACAC GGTGACGTTC GTGCTGCCGA AGACGATTGG GAATTGCGAG CTGGTGGATG TCGGCGTGGC CGAGCTTGGC GGGGTGTTCG AAACCGCCTG CCAGAAATAG
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Protein sequence | MIRTDGNGNS VVHVATGEQY DVTIGKGLIG RVASFVPSLE KVSRVAVVTD DVVEGLFLGD VTDGLKRAGF EVSAFAFPAG EPSKNIHTFA AVLEHLAEHR MTRNDMVVAL GGGVVGDVAG FAAASYMRGC PYVQVPTTML AAVDSSVGGK TAINLQAGKN LAGAFYQPSA VVCDIDCIAA LPSGEFANGM AESLKYGVLC DAGLFDDLGD NPRDHLQELI ARCVNIKRRY VEADEHEGGL RKFLNLGHTF GHAIEKCSGY AVPHGSAVAI GMVMAARVSA SRVMADQALV DRLARALESA GLPTSTDIPA EELAWAAQSD KKRSGDTVTF VLPKTIGNCE LVDVGVAELG GVFETACQK
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