Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shel_09160 |
Symbol | |
ID | 8394807 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Slackia heliotrinireducens DSM 20476 |
Kingdom | Bacteria |
Replicon accession | NC_013165 |
Strand | - |
Start bp | 1057597 |
End bp | 1058922 |
Gene Length | 1326 bp |
Protein Length | 441 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 644985675 |
Product | 23S rRNA (uracil-5-)-methyltransferase RumA |
Protein accession | YP_003143307 |
Protein GI | 257063635 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.0844867 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTGAAC AAATAACCAT CGAACGCCTT CTTTACGGCG ACGCGGGAAT CGGACACCTG TCCGACGGCC GCGCCGCATT CGTCGACGGC GCCTGCCCCG GCGACGTCCT CGAGGTTGCG GTCGAGAAGG ACAACGGTAA CTATCTTACC TGTTCAATTA AGGAAATCGT GTCCCTTTCC GAACATCGCG TCACCCCGAA ATGCCCCTTG GCATCCGTAT GCGGAGGGTG CGGCTGGCAG CACGTTGCCT ACGATTGGCA GCTCGTCGAA AAGCGCGCCA ACGTGGTTTC CCAGCTGCAG CGCACCGCAC ACTTCGACCC CGACCGGGCC GAGGCCATCG TTGCGGAATG CAAACCCTCC CCCAAGCAGT TCGGATACCG AAACAAGCTT GAATTCGGGT GCCAAATCGA CCCGAAACGT GGTTTTCTCA TGGGGCTGCA CCGCCGAGGA TCCGACGATG TGCTGCCCGT CGACTCGTGT CCTTTGGCCC AAGGTCCGCT CAGCAAGACG CCTAAAGCCC TCAAGGGAGC CCTGCGTTAC CTGAGCGGTT CGAACGACCT GGGCATCTAC CGCGTCGGCG TCAGGCAGTC GGCCCGCACC CGATCCACCG AGATCGCGCT CTGGACCACC CCCGGTCCCT TCCCCAGAGC GACCGTGGCC AAAACTCTGG GCAACGCCAT GAAGTGTACG AGCATCGTTC GTGTCATGAC AGGCGAAGGG AAGAAGGCCC GCAAGCTCAA AGGCGTCGAG CTGCTAGCAG GCGACGGATA TTGGAAGGAA CGTGTCGCAG GCCAGCCGTT CAAGGTGAGC GCCCCGTCGT TCTTCCAGGT GAACACCGAG CAGGCCGAAA CCCTGGTGGA ACTGGCCCTG GACGGGCTCG AAATCGACGA AGGCTCAGTG GTAGCCGACC TGTACTGCGG CGTGGGCACC TTCACCATCC CCATGGCGAA GACCGGCGCC GAAGTCATGG CGGTCGAAAG CTACGGCTCC AGCGTGCGCG ACCTGCGTCG CATCACCGAG GAAGAGGGGC TCTACATCGA CGTCATCGGC GGCGATGCCG CCCGCGAGTT GCCGGGCTTG GGACATCTGG ACGCGTTGCT GGTGGACCCG CCCCGCGCCG GTTTGGACGC GACGATCATT CCTGCCATAG CCGCGGCCGG TCCCCGTCGA CTCGCCTATG TGAGCTGCGA CCCCGCCACG TGGGCCCGCG ACGTCAAGCG ACTTGAAGAT CAAGGGTTCG AACTGGTCAA GGCCACGCCG GTGGACATGT TCCCCCAGAC CCACCATGTC GAAATAGTCA GCATCTTCAC GAACCGCAAG AACTGA
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Protein sequence | MSEQITIERL LYGDAGIGHL SDGRAAFVDG ACPGDVLEVA VEKDNGNYLT CSIKEIVSLS EHRVTPKCPL ASVCGGCGWQ HVAYDWQLVE KRANVVSQLQ RTAHFDPDRA EAIVAECKPS PKQFGYRNKL EFGCQIDPKR GFLMGLHRRG SDDVLPVDSC PLAQGPLSKT PKALKGALRY LSGSNDLGIY RVGVRQSART RSTEIALWTT PGPFPRATVA KTLGNAMKCT SIVRVMTGEG KKARKLKGVE LLAGDGYWKE RVAGQPFKVS APSFFQVNTE QAETLVELAL DGLEIDEGSV VADLYCGVGT FTIPMAKTGA EVMAVESYGS SVRDLRRITE EEGLYIDVIG GDAARELPGL GHLDALLVDP PRAGLDATII PAIAAAGPRR LAYVSCDPAT WARDVKRLED QGFELVKATP VDMFPQTHHV EIVSIFTNRK N
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