Gene Shel_08070 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_08070 
Symbol 
ID8394698 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp935117 
End bp936346 
Gene Length1230 bp 
Protein Length409 aa 
Translation table11 
GC content60% 
IMG OID644985567 
Productglycopeptide antibiotics resistance protein 
Protein accessionYP_003143212 
Protein GI257063540 
COG category[V] Defense mechanisms 
COG ID[COG4767] Glycopeptide antibiotics resistance protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000000781002 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGTCGTCCT ACGTTGCATC CATCAGTTTT TCGGTGTTCA GCTTCCCGCT GGTCGCAGCT 
TTGTGCACGT TGCCGTACAT GGTGTATCAG TACCGCCGCT ACGGTCGCGT GCCGGTGTGG
AAGTCCTTCG TCGTATTCTT GTTCATATTC TATATAACCA CGGCGTATTA CCTGGTCATC
ATGCCGCTGC CGGAAAGCCG CGATGCCGTG GTGGCGGGGG CACGCATCCC GAACCTCGAA
TTGTTCCGGT TCGTGCGCCG CATAGCCGCC CAAGCCGGAT TCAGCATGAC AGACCCATCT
TCATGGGTTG CGACGCTGAT GATCCCCGAT GTGTACGAGG CCCTGTTCAA CGTGTTTTTG
ACGGTGCCTT TCGGCATCTT CATGAAATAC TTCTTCGGCT GCCGCTGGTG GCAGGCGCTC
GTGTCGGGCT TGGCCTTGTC GCTGTTTTTC GAAACGTCCC AGTTGACAGG CCTATGGGGA
TGGTATGCGC ACCCGTACAG GCTTTTCGAC GTGGACGACC TGCTGATCAA CACCACAGGG
GCCATGCTGG GCTTCTGGCT GGCGTTTCCT CTGACGTGGC ACCTGCCCGA CATCGACGAC
ATGAACGAGG AGTCGCTGCG CCAAAGCGCG TCGTTTACTA CGTTCACGCG CCGACTCTGG
GCGTTTGCCA TCGATGTTGC GCTTTGCTCC GGGGCCTTCG CCGTTTGGAC CGTGGCGAAA
CCGACGGTGC CGAACCCCGA GGCTGGCGAT CTTGCCGCTC TGCTGGTCAT AACAGGAATC
GTCTTCGTGC TGGCTCCGGC TTTGGCCGAT CATGCGACGT TTGGGCAGCG TCTGCTGGAG
CTGCGCATTG TGGGGCCCGA TGGCGGCCGC ACCCGATGGT ATCGTGCTTG CGGACGCTAC
ATCCTGCTCA TCTGGGTGTT TCTCATGCTG CCTGCCTGGG CGTTCGTCCT TCTGCCACGC
ACCATCGAAG GCGTGCCCGT CAATTCCTCT TTGGTTGCAT CGGTCTTGGC GACGGTGTAT
GGAACGTGGC TGCTGACGGT GGCGGTGCGG GCGATCCGCT CGGCGAGGCG CCATCCTTTC
GTCATGCTCA ACGGCATCCT GACAGACACG CGCATCATGT CGCTCGAGCA GATCAGCGCA
TTGCGTGGGG CGGACGCGGC TGGCTATTTC GTCAGCAACG ATGCGAGTAC GTCGGAAACC
TCGGCGAACG AGACGGCGGA TTCTGAGTAG
 
Protein sequence
MSSYVASISF SVFSFPLVAA LCTLPYMVYQ YRRYGRVPVW KSFVVFLFIF YITTAYYLVI 
MPLPESRDAV VAGARIPNLE LFRFVRRIAA QAGFSMTDPS SWVATLMIPD VYEALFNVFL
TVPFGIFMKY FFGCRWWQAL VSGLALSLFF ETSQLTGLWG WYAHPYRLFD VDDLLINTTG
AMLGFWLAFP LTWHLPDIDD MNEESLRQSA SFTTFTRRLW AFAIDVALCS GAFAVWTVAK
PTVPNPEAGD LAALLVITGI VFVLAPALAD HATFGQRLLE LRIVGPDGGR TRWYRACGRY
ILLIWVFLML PAWAFVLLPR TIEGVPVNSS LVASVLATVY GTWLLTVAVR AIRSARRHPF
VMLNGILTDT RIMSLEQISA LRGADAAGYF VSNDASTSET SANETADSE