Gene Shel_04060 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_04060 
Symbol 
ID8394298 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp482672 
End bp483490 
Gene Length819 bp 
Protein Length272 aa 
Translation table11 
GC content62% 
IMG OID644985170 
Producthypothetical protein 
Protein accessionYP_003142816 
Protein GI257063144 
COG category[R] General function prediction only 
COG ID[COG4245] Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.151575 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTGCACCA ATCGGCTGGA GGACCCCATG CCCAACATCG AGTACACCAT GGCGAAGGCC 
CGCAAGCTGC TGCCCATCAT CTATGTGATA GATACGTCCG GCTCGATGAA TTTCTACGGG
CGCATATCAG CCGTCAACAG GGCCATGAAC GAGACGTTGG ACGTGCTTGG GGACGTGGCC
GCGAAGAATC CCACCGCCGA CGTCAAGGTT GCCGTGCTTG GGTTCTCTAC GGGTGCGGAA
TGGATTACCA CCGACCCGGT GACGGGCAAG CCGGCGCTTA TGGACCTGGA GGATTTCTAT
TGGGACAAGC TGAAGGCCCG TGGGTCCACC GACCTGGGTG CGGCCCTCAT CGAGCTGGGC
GAGCAGCTCA CGCGCGATGC GATGCTGGTC AGCGAGACCG GGTTCAAGGT TCCAGTCATC
ATCTTCATGA GCGATGGCGG GCCCACCGAC GATTGGGAAA GCGCCTTCGA GAAGGTGTGC
GCAAACAACC GCTGGGTGCG GGCCGCCACC AAGATAGCCC TGGCCGTGGG CGACAACGCC
GATAGGGAAG TGCTTGCCCG CATCGCCGAC GGCAACCCCG AGGCCGTGGT TCCCGTTTCC
GACAGCGCCA CGCTGCAAAA GCTCATCAAG GTGGTTTCCG TAACGGCGTC CATGATCAAC
GGCAGAAGCC GCACGAGCGA CAGCAACCAG AACGATATCG TCAACGCGGT CCGCACCGAG
ATGGGCATGA CCGTCCGGCC TGAACCCGAG CGAACGGATA CGGCGGACAT TTCCGGTAAC
GACGAGGTTT GGGACGACCT CGACGACAGC TGGGCATAA
 
Protein sequence
MCTNRLEDPM PNIEYTMAKA RKLLPIIYVI DTSGSMNFYG RISAVNRAMN ETLDVLGDVA 
AKNPTADVKV AVLGFSTGAE WITTDPVTGK PALMDLEDFY WDKLKARGST DLGAALIELG
EQLTRDAMLV SETGFKVPVI IFMSDGGPTD DWESAFEKVC ANNRWVRAAT KIALAVGDNA
DREVLARIAD GNPEAVVPVS DSATLQKLIK VVSVTASMIN GRSRTSDSNQ NDIVNAVRTE
MGMTVRPEPE RTDTADISGN DEVWDDLDDS WA