| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_1926 |
|---|
| Symbol | |
|---|
| ID | 4459763 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | - |
|---|
| Start bp | 2350093 |
|---|
| End bp | 2351007 |
|---|
| Gene Length | 915 bp |
|---|
| Protein Length | 304 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639702693 |
|---|
| Product | pseudouridine synthase |
|---|
| Protein accession | YP_846046 |
|---|
| Protein GI | 116749359 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000261611 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00324235 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACACCCA TGGATTTCCG GATCCCGGAT ACCGACCGCT GGACGGCTGA TCCGGCCCTG
AAAGGGACCG GGCTTGCGCG CCTCATCGCC CGATACCTGC TCATCTCCGA GGACCGGGCG
GAGGATCTCA TCGATTTCGG GTCGGTTTAC ATTGACGGGC GCGTCGAGCG GAATCCGGCA
CGAACGCTCC GGGGCGGCGA GGAAATCGTC GTCAACTGGC CCCGGCACGG TACGCAACGG
CACTATGAGA TCGATCCCGC CCGCATACTC TACCGGGACG CTCACCTGCT GGCCTACGAC
AAGGAAGCCG GGGTCCCCAG CCAGCAGACC CCCGCCGACG CTTACAACAA CCTCTACGCG
GCGCTGATCC GGTTTCTCGC CGGGGAAGCC CGCGCCTCGG CGCCGTACGT TGCGCTCCAC
CATCGCCTCG ACAGGGAAAC CAGCGGCGTG ATGGTGTTTG CCCTGGATCG CGCCGTCAAT
CGCCGGCTCG GGGAGTCATT CCAGGAGAAG CGCGTGGTGA AGGATTACCT TGCCTGGGTG
GACGGAGTTC CCGTCCTGGA CCGCTGGACG GCCGTCGAAG ACATTTGCAG AAAGGACGGG
CGCTACCGAA CCTGCCCGCA AGGGAGGGGA AAAGCGGCAC GGACCTTGTT GCGAGTGCTG
TTGCGCGCGG GCGACAGGGC GTTGATCGCC GCCCGGCCCG TCACCGGGCG AACCCACCAG
ATCCGGCTTC ATCTCGCCGC GTGCGGCCAT CCGGTGATCG GCGACCGGCT CTACGGCGGG
ACCTCGGGGG AACGGCTCCA TCTTCATGCC CTGCGGCTCA GGCTCCCTCA TCCGAAGCAC
GATTCGGAGC TGGTTCTGAG CGCTCCTGTT CCGGAGTACT GGCCGGAACC TCGGGCAGTG
GACATTCCGG ATTGA
|
|---|
| Protein sequence | MTPMDFRIPD TDRWTADPAL KGTGLARLIA RYLLISEDRA EDLIDFGSVY IDGRVERNPA
RTLRGGEEIV VNWPRHGTQR HYEIDPARIL YRDAHLLAYD KEAGVPSQQT PADAYNNLYA
ALIRFLAGEA RASAPYVALH HRLDRETSGV MVFALDRAVN RRLGESFQEK RVVKDYLAWV
DGVPVLDRWT AVEDICRKDG RYRTCPQGRG KAARTLLRVL LRAGDRALIA ARPVTGRTHQ
IRLHLAACGH PVIGDRLYGG TSGERLHLHA LRLRLPHPKH DSELVLSAPV PEYWPEPRAV
DIPD
|
|---|
| |