| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_1501 |
|---|
| Symbol | |
|---|
| ID | 4460552 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | + |
|---|
| Start bp | 1858213 |
|---|
| End bp | 1860102 |
|---|
| Gene Length | 1890 bp |
|---|
| Protein Length | 629 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639702268 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_845625 |
|---|
| Protein GI | 116748938 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0457] FOG: TPR repeat |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.961258 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGATT ACCGGATCGG AGTTTTCACA TCGAGAATAT TGGGGACAGG CCGGAGGCGG
GGCGCGGCGC GCCGCAATCC CCGCGCCTGC GGCGCTTTCC TTGCCGTTGC GGTGGCCCTC
TGCGCGTGGG GACTTCCGGG ATGCTCCTCA AAGAACGCGG GCGACGGCGT TTCCCTTCAG
AAACACTATG CCAAGCAGAT CGAGAAGCAG AATGCAAACA TCCCCGAGGA GATAAAAAAA
GCCGAAAAGC TGCCGGAAAT GAGCGAGGCC GACTACGAGA GGATGGGTGA CACGTTTGCC
AGGCAGGGGG AAACCACCAA GGCTTTCATC AGCTACGAGA AGGTCCTGCG CAAGGAGCCC
GATCTCACCC GGGTCCGTCT GAAGCGAGGC ATGATGTTTC TTGCCAGGGA CATGAACGAT
GAGGCGATCA GGGACTTTCA ACAGGTCCTG GCGAAGGAAC CCGGCAACGC CCAGGCCTAC
GAGGGGATCG GGCACGCGCT CTTCAAGCGC AGGCGTTACG ATGAGGCGGA AAAGAACTTC
CGGGAGGCGG TGAAGCTGAA CAACAGCCTG TGGATGTCCC ACAACTTCCT GGGCATCGTC
TACGACTACA AACAGCGTCC CGAGCTGGCC GTGCCGGAAT ACCAGGCGGC CATCGCCGTC
CGACCCGACG AGGGACTGCT CTACAACAAC CTGGGAATAT CCTACGCGAT GATGGGGGAC
TTCGAGAAAG CCGCCGCCGC ATTCCAGGAA GCGATGCAGA AACGGCCCAC GAACCCGAAA
ATCAGCAACA ACCTCGGCAT TATACTGTGC AGGCTCGGAC GGCAGTCCGA AGCTTTGGCC
GCGTTCGGAA AGGCGGGTGA TGAAGCCCAG GCCTACAACA ACCTGGGATG CGCCTACATG
ATGGACGGCG AATTCGAAAA AGCGGCGCGG GCGTTCGAGA GAGCCGTCAG TCTGAGAACC
ACCTATTATG CCCAGGCCAG CGACAACCTC AAGAAAGCCG AAATGGCCCT GCATTCCAGT
GGTGCCCTGG GCCGGCAGAC GCCGCCCCCC GGCTCTCCGG TGCCCGTGTC CGGCGCCCCG
GCGGTTTCCA GGACCCCGAT TCTTCAGGAA CTCAAACGCG AGCCGATCAA GGAGCAGAAC
CTCATCGAAC CGGTCACGGC CGTGAAAGGG ACGAAAGCCG CCGAACCGGC GGACTCCGCC
AAGGTGAAGA GCGTCTCCAC GCCCGCGCCG GCACCACGGG AGCAGGCTCC CCCCAATCCC
GTGACGATGG GGAAAGAAAC GAGCGCCGTC GAACCGACGA CCGGGAAGGA AACGAACCCC
GTCAAACCGG AGGATCCCGC GAAGGCGAAG AGTTCCCCCG AACCCGCGCC GGCACCGCGG
GAGCAGGCTC CTCCCAATCC CGTGACGATG GGGAAAGAAA CGAGCGCCGT CGAACCGACG
ACCGGGAAGG AAACGAACCC CGTCAAAACG GAGGATCCCG CGAAGGCGAA GAGTTCCCCC
GAACCTGCGC CGGCACCGCG GGAGCAGCCT CCTCCCAATC CCGTGACGAC GGGGAAAGAA
ACGAGCGCCG TCGAACCGAC GACCGGGAAG GAAACGAACC CCGTCAAAAC GGAGGATCCC
GCGAAGGCGA AGAGTTCCCC CGAACCCGCG CCGGCACCGC GGGAGCAGGC TCCTCCCAAT
CCCGTGACGA TGGGGAAAGA AACGAGCGCC GTCGAACCGG CTGCCGGGAC CGGCAAAGAG
AAGCCTGACG CTGAGGCGAA GGAAACCGCC GTCCGGGAAA AGAATGTCGC TGCACCTGCG
TCAGACCTGA AAAAGTCGGG GGGTGCGGAA TCGGGAGCGG TCGGGGCACC ATCCCCACCG
GCTCCCCCGG GGGTTGCAGC CAACCCGTGA
|
|---|
| Protein sequence | MIDYRIGVFT SRILGTGRRR GAARRNPRAC GAFLAVAVAL CAWGLPGCSS KNAGDGVSLQ
KHYAKQIEKQ NANIPEEIKK AEKLPEMSEA DYERMGDTFA RQGETTKAFI SYEKVLRKEP
DLTRVRLKRG MMFLARDMND EAIRDFQQVL AKEPGNAQAY EGIGHALFKR RRYDEAEKNF
REAVKLNNSL WMSHNFLGIV YDYKQRPELA VPEYQAAIAV RPDEGLLYNN LGISYAMMGD
FEKAAAAFQE AMQKRPTNPK ISNNLGIILC RLGRQSEALA AFGKAGDEAQ AYNNLGCAYM
MDGEFEKAAR AFERAVSLRT TYYAQASDNL KKAEMALHSS GALGRQTPPP GSPVPVSGAP
AVSRTPILQE LKREPIKEQN LIEPVTAVKG TKAAEPADSA KVKSVSTPAP APREQAPPNP
VTMGKETSAV EPTTGKETNP VKPEDPAKAK SSPEPAPAPR EQAPPNPVTM GKETSAVEPT
TGKETNPVKT EDPAKAKSSP EPAPAPREQP PPNPVTTGKE TSAVEPTTGK ETNPVKTEDP
AKAKSSPEPA PAPREQAPPN PVTMGKETSA VEPAAGTGKE KPDAEAKETA VREKNVAAPA
SDLKKSGGAE SGAVGAPSPP APPGVAANP
|
|---|
| |