Gene Sfri_3647 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_3647 
Symbol 
ID4280540 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp4326215 
End bp4326829 
Gene Length615 bp 
Protein Length204 aa 
Translation table11 
GC content45% 
IMG OID638136460 
Productcold-shock DNA-binding domain-containing protein 
Protein accessionYP_752313 
Protein GI114564799 
COG category[K] Transcription 
COG ID[COG1278] Cold shock proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAAGAG GCACGTTAAT TCGTTGGAAC ACCGAAAAAG GCTTTGGTTT TATCAAGCCA 
GAAACCGGTG ATAATCAAGA TGTCTTTATT CACATCTCAA CCCTAAAGCA CATGGCCAGA 
AAGCCTATTG TTGGCGATGA GATACTATTT CATCGCGAGA ACCAACCCGA TGGCAAAGTC 
AAAGCCGTAA AAGCCAGTAT TGAAGGCGTC GCAGTTGTGT CAAACACTAT TCGACCAGCG 
TCTCACACTG GCCAACATCA TCGAAACAAC CAATCTCATC ATGACGAAAA CTACCGCTCA 
AGTCCCGTGC TTGGCCGTTT GATCATGCTT ATTATTCTGC TTGGGGTTGG TATTTTCGGT 
TATAAACAAT ATCAAAAAAT GACCGCCACG CCAGTGCTCA CCAATGCAGA TGTTGAACAG 
ATGGAGTGGA CACCAACCGT ATCAAAACCA AGCTCAATCA ATCTACAACC ACAGTTCAGA 
TGCGAAGCTG GTAAAACACA CTGCAGCCAA ATGCGCTCAT GTGCAGAAGC AACCTTTTAT 
ATCCGTAACT GTCCAGGAAC TGAAATGGAT GGTGATGGGG ACGGAGTTCC ATGTGAAAGG 
CAGTTCTGTA ATTAA
 
Protein sequence
MERGTLIRWN TEKGFGFIKP ETGDNQDVFI HISTLKHMAR KPIVGDEILF HRENQPDGKV 
KAVKASIEGV AVVSNTIRPA SHTGQHHRNN QSHHDENYRS SPVLGRLIML IILLGVGIFG 
YKQYQKMTAT PVLTNADVEQ MEWTPTVSKP SSINLQPQFR CEAGKTHCSQ MRSCAEATFY 
IRNCPGTEMD GDGDGVPCER QFCN