| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3456 |
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| Symbol | |
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| ID | 4280353 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 4109193 |
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| End bp | 4110119 |
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| Gene Length | 927 bp |
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| Protein Length | 308 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 638136272 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_752126 |
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| Protein GI | 114564612 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.419499 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAATTAA TTTCTAGTTT TACAAAAGTT CTATTCTTAA CCAGCTTCTT ATTTTTTACA
GGGTCTATTT TTGCAGAGTC TGGTCATGGA GATGAATCAG AACATGAAGA GGAAGGGCAT
ATAGAATTAT CTAACGAGCA AATACAGCAT GCCGGAATAG TGGTTAGCAC CGTTGGTGCC
AATGTTATTC GTGATGTATT ACCTGTTTAT GGTTTGGTTG CTACTAATGC TGAAAGTTTG
CAAGTGGTTA ATGCCAGATT TGATGGTGTG GTACGTGATG TAAAGAAGAG CATCGGTGAT
CCGGTCCGTA AAGGTGAAAC ATTGTTAATT GTTGAAGCAA ATGAAAGCTT GAAAAACTAT
TCAATAACTT CTGAAATTAA TGGATATATC ACACAGCGAA ATATAAATAT TGGAGAGAAA
ACAAATGAAA CTCCTTTACT GGTGATTCAA GATTTTTCTA CTGTTTGGGT AGAATTAAGC
ATATTTCCGA AGGATCTTCC TTTGGTCAAA TTAAATCAGA CGGTTAACAT ACAAAGTACT
GATTTAAAAA ATATTTCAGA AGGTAAAATT ATTTATATTT CACCATTTGG ACAAGTGCAA
AGCCAAGCCA CTAAAGCTCG TGTTCTACTT GAAAACAGCA ACAACATTTG GAAGCCGGGC
TTATTTGTTA ATGCCAACAT TACACTTGAT GAAATAAATG CGCCAGTTTC TATACGTAAT
GAAGCAATAC AAGTTATTGA AGATAAAAAT GTAGTTTTTG TCAAAGGTGA ATCTGGGTTT
GAACCACGCG AAGTGAGCCT TGGTCGAACA GATGGTCAAT ATAGTGAAGT TCTAACGGGT
TTGTCGGTTG GTGAAATGTA TGTGAGTAAC AATAGCTTTG TTTTGAAGTC TGAGTTGGGG
AAAGAGGATG CTGAACATGG GCATTAA
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| Protein sequence | MKLISSFTKV LFLTSFLFFT GSIFAESGHG DESEHEEEGH IELSNEQIQH AGIVVSTVGA
NVIRDVLPVY GLVATNAESL QVVNARFDGV VRDVKKSIGD PVRKGETLLI VEANESLKNY
SITSEINGYI TQRNINIGEK TNETPLLVIQ DFSTVWVELS IFPKDLPLVK LNQTVNIQST
DLKNISEGKI IYISPFGQVQ SQATKARVLL ENSNNIWKPG LFVNANITLD EINAPVSIRN
EAIQVIEDKN VVFVKGESGF EPREVSLGRT DGQYSEVLTG LSVGEMYVSN NSFVLKSELG
KEDAEHGH
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