Gene Sfri_1778 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1778 
Symbol 
ID4277557 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp2089745 
End bp2090341 
Gene Length597 bp 
Protein Length198 aa 
Translation table11 
GC content40% 
IMG OID638134562 
Producthypothetical protein 
Protein accessionYP_750466 
Protein GI114562953 
COG category[S] Function unknown 
COG ID[COG1901] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.459954 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGCGCTT TTGTCGTTCG AGCCAGAGCT GCTCCAGTTG ATAGTCAACA ATTTCTAGCC 
GCTATTGGTC ATGAAGCTCA CACTGAAATT TTAGCTCACA CCTTAATGAA TACCATTTTT 
GTCGCCCAAT CTCATCGTGA CGATGTTGTG GTGTATTTAG TGCTAGAAAG TACCCAAGAC 
TTTTCTCGCA CAATTTGCTT TCGTTCAAAC GAATTAGGTC ATATCGGTGG CTTTCACGAG 
CAAAACTTAA CCAATAAAAT AGCTAAAGCC TTAACGGTAT CTAAAGGCAT GGCGAAAGAA 
CAATTACGTG AAGTTGAAGC AGGAATTACG GTACGCACCG TGAGTTTCGA AAAATTGATA 
CAGGAATTAG CTGAAGATTA TCAACTGTAT ATGTTAGAGA AAAAAGGTAC TCCAGTACGT 
GATATCGAGT TTGCTGCTAA CCCGTGTTTT TTACTGACCG ATCATATTCC TATGCCGAAA 
AAGAGCTTTA ATAGCCTTAA ACGTCTTGGT ACTCAACACA TTAACTTAGG CCCTAAAATG 
CTGTTTGCAT CGCAATGCGT GGTGTTGATC CACAATGAAT TAGACATGAG ATTGTAA
 
Protein sequence
MRAFVVRARA APVDSQQFLA AIGHEAHTEI LAHTLMNTIF VAQSHRDDVV VYLVLESTQD 
FSRTICFRSN ELGHIGGFHE QNLTNKIAKA LTVSKGMAKE QLREVEAGIT VRTVSFEKLI 
QELAEDYQLY MLEKKGTPVR DIEFAANPCF LLTDHIPMPK KSFNSLKRLG TQHINLGPKM 
LFASQCVVLI HNELDMRL